Click here to switch to the map view.

The map label for this gene is sss [H]

Identifier: 157372282

GI number: 157372282

Start: 4486861

End: 4487892

Strand: Reverse

Name: sss [H]

Synonym: Spro_4048

Alternate gene names: 157372282

Gene position: 4487892-4486861 (Counterclockwise)

Preceding gene: 157372283

Following gene: 157372281

Centisome position: 82.36

GC content: 45.83

Gene sequence:

>1032_bases
ATGAAAAACGAAGAAAAGATGCACGACGAGTGGGAATTGCTGCTCGAGGAATATTTCTTTACTAAGCAACTTCGTTCAGC
AACGGAATGGAGCTACAGGAAAGTTGCTCTGACGTTTACGCGTTTTATTGGTGGAATTATTACCCCAGCTATGGTGACGC
AAAGGGACGTCCTGGTTTGGCGCCGACATCTGTTAAAGGAGAAAAGTCTCTCGGTGCATACCTGGAACAATAAGGTAGCT
CACTTGCGGGCTATATTTAACCTGGGAATTAAAAAAGGGTTAGTTCAGCACACGGAGAATCCCTTTAACGGAACTGTAGT
CCGTTCTGATACCAAGAAAAAACGAATATTGACGAAGACTCAATTGACCCGCCTTTACCTCGTAATGCAGCAGTATGAAC
AGAGGGAGAAAGAGAGAAAACCAGTGAAAGGTGGGAAATGTGCTCTCTACCCAACCTGGTTCTGGATGACGGTATTAGAC
ACATTCCGATATACCGGGATGCGTAACAATCAGATGATCCACATCAGACTGAGAGATGTGAACCTTGAGCAAGGCTGGAT
CGAGCTTCGGCTTGAAGGAAGCAAAACACATAGAGAGTGGAAGGTACCACTGGTTCGTCAATTAAGAGAACGAATAAAGC
TGCTTATTATGCGTGCTACTGAGCGAGGTGCTGGTCAGCATGACCTGCTTTTTGACGTCAAACGGTTCACCAACCCACGG
CATACTCATTACATCTATGACGAAAAAAATGTTCTGCAGTCCTTTCGTAGCTTTTATCGTCGGTTGTCGAGGGATAGTGG
CTTTGATATTTCCTCACACCGTTTCCGCCACACGCTAGCCACGGAGCTGATGAAATCCCCGGACAGAAATCTAAAACTGG
TGAAGGATCTGCTGGGTCACCGTAACGTCAGTACCACAATGGAGTATATCGAATTGGATATGGAAGTAGCGGGGAAAGCA
CTCGAACAGGAGCTTGTTTTACATACGGATATCACTGCGACGAGAAGCTTACAAAGCTTGACACAGGTATGA

Upstream 100 bases:

>100_bases
TCGTGATCCCGTAGTCGCTAGATGTAAGAAGGAGCTCATAAAGTGTTGGGTTCAACTGACGGGTTGTGAGTAGATAAATA
TACTAATTCGAGGTCATGAA

Downstream 100 bases:

>100_bases
TTTGCTGTGAATATCACCAGTGATCGAGAAAAGGACGCCTGTGCAGTAACACAGGCATCCTTCTTGAGGAATTCAACTTA
CAACGTCGCGGTAGTAAACA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MKNEEKMHDEWELLLEEYFFTKQLRSATEWSYRKVALTFTRFIGGIITPAMVTQRDVLVWRRHLLKEKSLSVHTWNNKVA
HLRAIFNLGIKKGLVQHTENPFNGTVVRSDTKKKRILTKTQLTRLYLVMQQYEQREKERKPVKGGKCALYPTWFWMTVLD
TFRYTGMRNNQMIHIRLRDVNLEQGWIELRLEGSKTHREWKVPLVRQLRERIKLLIMRATERGAGQHDLLFDVKRFTNPR
HTHYIYDEKNVLQSFRSFYRRLSRDSGFDISSHRFRHTLATELMKSPDRNLKLVKDLLGHRNVSTTMEYIELDMEVAGKA
LEQELVLHTDITATRSLQSLTQV

Sequences:

>Translated_343_residues
MKNEEKMHDEWELLLEEYFFTKQLRSATEWSYRKVALTFTRFIGGIITPAMVTQRDVLVWRRHLLKEKSLSVHTWNNKVA
HLRAIFNLGIKKGLVQHTENPFNGTVVRSDTKKKRILTKTQLTRLYLVMQQYEQREKERKPVKGGKCALYPTWFWMTVLD
TFRYTGMRNNQMIHIRLRDVNLEQGWIELRLEGSKTHREWKVPLVRQLRERIKLLIMRATERGAGQHDLLFDVKRFTNPR
HTHYIYDEKNVLQSFRSFYRRLSRDSGFDISSHRFRHTLATELMKSPDRNLKLVKDLLGHRNVSTTMEYIELDMEVAGKA
LEQELVLHTDITATRSLQSLTQV
>Mature_343_residues
MKNEEKMHDEWELLLEEYFFTKQLRSATEWSYRKVALTFTRFIGGIITPAMVTQRDVLVWRRHLLKEKSLSVHTWNNKVA
HLRAIFNLGIKKGLVQHTENPFNGTVVRSDTKKKRILTKTQLTRLYLVMQQYEQREKERKPVKGGKCALYPTWFWMTVLD
TFRYTGMRNNQMIHIRLRDVNLEQGWIELRLEGSKTHREWKVPLVRQLRERIKLLIMRATERGAGQHDLLFDVKRFTNPR
HTHYIYDEKNVLQSFRSFYRRLSRDSGFDISSHRFRHTLATELMKSPDRNLKLVKDLLGHRNVSTTMEYIELDMEVAGKA
LEQELVLHTDITATRSLQSLTQV

Specific function: Potential site-specific recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40899; Mature: 40899

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNEEKMHDEWELLLEEYFFTKQLRSATEWSYRKVALTFTRFIGGIITPAMVTQRDVLVW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRHLLKEKSLSVHTWNNKVAHLRAIFNLGIKKGLVQHTENPFNGTVVRSDTKKKRILTKT
HHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH
QLTRLYLVMQQYEQREKERKPVKGGKCALYPTWFWMTVLDTFRYTGMRNNQMIHIRLRDV
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
NLEQGWIELRLEGSKTHREWKVPLVRQLRERIKLLIMRATERGAGQHDLLFDVKRFTNPR
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
HTHYIYDEKNVLQSFRSFYRRLSRDSGFDISSHRFRHTLATELMKSPDRNLKLVKDLLGH
CEEEEECHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
RNVSTTMEYIELDMEVAGKALEQELVLHTDITATRSLQSLTQV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKNEEKMHDEWELLLEEYFFTKQLRSATEWSYRKVALTFTRFIGGIITPAMVTQRDVLVW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRHLLKEKSLSVHTWNNKVAHLRAIFNLGIKKGLVQHTENPFNGTVVRSDTKKKRILTKT
HHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH
QLTRLYLVMQQYEQREKERKPVKGGKCALYPTWFWMTVLDTFRYTGMRNNQMIHIRLRDV
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
NLEQGWIELRLEGSKTHREWKVPLVRQLRERIKLLIMRATERGAGQHDLLFDVKRFTNPR
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
HTHYIYDEKNVLQSFRSFYRRLSRDSGFDISSHRFRHTLATELMKSPDRNLKLVKDLLGH
CEEEEECHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
RNVSTTMEYIELDMEVAGKALEQELVLHTDITATRSLQSLTQV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11021913 [H]