| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
Click here to switch to the map view.
The map label for this gene is xdhA [H]
Identifier: 157372252
GI number: 157372252
Start: 4458789
End: 4461578
Strand: Reverse
Name: xdhA [H]
Synonym: Spro_4018
Alternate gene names: 157372252
Gene position: 4461578-4458789 (Counterclockwise)
Preceding gene: 157372255
Following gene: 157372251
Centisome position: 81.88
GC content: 59.78
Gene sequence:
>2790_bases ATGAGCAATTTTAGCCCGTCGCGGCGCCGCTTTATCAAAAGCGCCGTGATTGCGGGGGTATCCGTGTACCTCGCGCCACT GTACAGCCGTGCTTATGCCGCGCTGTTTGAGCAAAAAATCCTTCAGTCCCCGAACTGGGATGCCCATGAAAAGCGTATTC GCTTTCGTATCGATGGTCGTGCCAAGGTGATGGGGCAAAAGGTATTCGCCCGCGACATTCGCGCGGTCGATATGCCGCAC TGGCCGCAACAACAGGCGCACGCCTTTATTTTACGCGTCACCAAGGCCGACCGGCTGTTCGAGGGCATCGATCTCTCGTT GCTGGGAGACGACCTGCAGCCCGACCGGCTGGTCACGGCAGAGGATCTGGCGCGTGACGGCCTGGCCTTCCCGGCGTTCT ACGGCGACGACATGCTGTTGCCGATCGGCAAAACTCCGGCCTATCTTGGCCAGGCGGTGGCAATTCTGATTTATCACGAT TTCGCCCGTTTCCGCTTTGCCAAAGACAAGCTGAAATTCCGTGAGGAAACTCTCAGGTACGGGGCGGAAACCGGCCCGCT GGAGCGGGATCCCTGGGGCACTTTCCGCTATGTGCGCGTGGGTGGCGATAAGCCGTTCGACGACGATCGCTTCTCCAGCC TGAAAGACACGCCGATTTTCCCGGTATCGATGAAGAAACACCTGCCGGTCTGGCCGGAAGGCCGCGAGGGCGGCAAGCTG GATCAGGAAGGGATGTATTACGCCGGCATGATAGCCAATGAGCTGCAAACGCCGCCGGAAGACTGGCTGGTGATGTCGCG TCGCTATACTACGCAATCCGTCGATACTTCGGCGCTGGAGCCGGATAACGCCAACGGCTGGTACGATGCCACGACGCAGA CCCTGCATCTGGTGGTGCCTACCCAGTCACCGCAGGAAGTGGCCGACGAAATGCCTCGCATGTTGGCCAAACACAATCCG CCGGTGAAACAGCTGATTTTACACCCGTGCTACACCGTCGGTTACGGTTCGAAAGATCACTTTAACTTCCCGTACTACGG TGCGGTGGCGGCGATGTACGGTGACGGGCACCCGGTACGCCTGGCCAATGACCGTTTCGAACAGTTCCAGACGGCGCTGA AGCGCCATGCCTTCGATATGAATTACCGTATTGCGGTCAACCGTCAAACCGGCGTACTGCAATCATTCCACGGCGAGATG ACGGCAGACGGCGGTGGTCGCAGCAACTTTACGCCGTCGGTGGTGATGGTAGCGGCGACGGCGGCACAGTCGATTTACTA CTTCCCGAAAAGCGATTTGTCGGCGGTGGGGCTGGCTTCGCGCGCCATTGATGCCGGATCTGCTCGTGGCTACGGCACGC TGCAAAGCATGGCCGCTACCGAGATGATGGTGGATGAACTGGCTGCCGAGCTGAAGATCGACCCGATCGAGTTCCGTTTG CGCAACGTACTCAAATCCGGCATGAAAAATACCCAGGGCGCTATCCCGGCCGGGGCAATTCGTGCCGATGAAGTGCTGGA AAAGGCAGCGAAGCATGAGATGTGGTTGCAACGTGCCCAGCGGAAGGCGGAGTTTGAGAGCCGGCACCCGGGCAAGCGTT ATGGCGTTGGTTTTGGCTGCGTGCAAAAAGACTTCGGCACCGGGGCCGAGACCTCGTTCGCTCGCGTCGAGCTGGGGGAA GATGGGCGCATCATGCTGCATCACAGCGGTGCCGAAATGGGAACCGGCATGTCGACCTCACAATCGGTGCTGTGCGCACA GTGGCTGGGCAAACCGGCGGATGAGGCGCACTTCTCGGTGACCGACTGGTCGGTACTGCCGATGGTCACCAGCGGCGATC CTTACATTATGTCGCAGGCCGAACAGGACAAGTTGCAAGCCAATCCGGCCTGGACGCCAAGCTATTGCTCACCGTCCAGC GCCAGCAACTCGGCGTATTACTTCTCCCACAGCACGCGCGAAGCGGCGCGTCTGATATTCGATCACGGCCTGTGGCCGGC GGCGATGGCCATTTGGCAATCCGGCCCCGGTGGCGGCCAGGCAGCACCATTAGTGGTGCGCAGAGAAGACGCACGTTGGG TGGAAGGCGGGCTGACCGCGGCCGGCATGGAAGTGCTGAGCCTGGAGCGGCTGGCGAAACAAGCCTACCAGATGGGCGGT ATCACCGGTGCGGCGGTACACGTATTTAACCGCTGGCAGTGGGCCGAGGCGGACTTCACCCTGAGCGGTAAAAGCGAGCG TCTGCCGATTGACGGGCTGGCGGTGCGCAATGCCAATGGCGAGTTTAAAACCTTGTCGCGCAGCCAGGCCTACTATCCAC CGACCCAACGCAATAACGCGGCGGTCACCTATTACAGCGCCGTCGGTACCCTGGCGGAAGTGGCGGTGGATATCGCTACC GGTCAGGTGGAGCTGCTGAACCACCATTCAATCATGGAGTGCGGCAATCTGATTGTGCCAGAGCTGGTTTCCGGCCAATT GCAGGGCGGCCTGGCAATGGGGATTGGCCATGCACTGCACGAATATTTACCGCTGTACGAAGACGGGCCTGGTAACGGTA CCTGGAACTTTAACCGTTACCATCTGCCGCGCGCCAGCGATGTGGCGGTCTGGAAACAGACCGATGACATCCTGCCCGCG CTGTCGGAAACCGATCCACCCAAAGGCATGGCCGAAGTGGTGATGATCCCGGTAGTTGCGGCACTGGTTAACGCTATCGC CGACGCTACCGGCCACCGTTTCCGTGATTTGCCCGTTCGTGCAGAAAATATTCGTGAGGTATTACAATGA
Upstream 100 bases:
>100_bases GTTATAAGCATATGCTTATGACGTCTACGGCAAGGTCGTCAGCGTTTGCGCAACACCACCGCTGAATACAAAAATACAAT AAAGAAGCAAAGGACTTTTT
Downstream 100 bases:
>100_bases GCATTAAAACCCAGCCGATTTCCCTGACCATCAATGAAAAGCAGTACGGCCCGATCGAAGTACCGGAAGGGCTGATGATG ATCGACTTCCTGCACGAATA
Product: aldehyde oxidase and xanthine dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 929; Mature: 928
Protein sequence:
>929_residues MSNFSPSRRRFIKSAVIAGVSVYLAPLYSRAYAALFEQKILQSPNWDAHEKRIRFRIDGRAKVMGQKVFARDIRAVDMPH WPQQQAHAFILRVTKADRLFEGIDLSLLGDDLQPDRLVTAEDLARDGLAFPAFYGDDMLLPIGKTPAYLGQAVAILIYHD FARFRFAKDKLKFREETLRYGAETGPLERDPWGTFRYVRVGGDKPFDDDRFSSLKDTPIFPVSMKKHLPVWPEGREGGKL DQEGMYYAGMIANELQTPPEDWLVMSRRYTTQSVDTSALEPDNANGWYDATTQTLHLVVPTQSPQEVADEMPRMLAKHNP PVKQLILHPCYTVGYGSKDHFNFPYYGAVAAMYGDGHPVRLANDRFEQFQTALKRHAFDMNYRIAVNRQTGVLQSFHGEM TADGGGRSNFTPSVVMVAATAAQSIYYFPKSDLSAVGLASRAIDAGSARGYGTLQSMAATEMMVDELAAELKIDPIEFRL RNVLKSGMKNTQGAIPAGAIRADEVLEKAAKHEMWLQRAQRKAEFESRHPGKRYGVGFGCVQKDFGTGAETSFARVELGE DGRIMLHHSGAEMGTGMSTSQSVLCAQWLGKPADEAHFSVTDWSVLPMVTSGDPYIMSQAEQDKLQANPAWTPSYCSPSS ASNSAYYFSHSTREAARLIFDHGLWPAAMAIWQSGPGGGQAAPLVVRREDARWVEGGLTAAGMEVLSLERLAKQAYQMGG ITGAAVHVFNRWQWAEADFTLSGKSERLPIDGLAVRNANGEFKTLSRSQAYYPPTQRNNAAVTYYSAVGTLAEVAVDIAT GQVELLNHHSIMECGNLIVPELVSGQLQGGLAMGIGHALHEYLPLYEDGPGNGTWNFNRYHLPRASDVAVWKQTDDILPA LSETDPPKGMAEVVMIPVVAALVNAIADATGHRFRDLPVRAENIREVLQ
Sequences:
>Translated_929_residues MSNFSPSRRRFIKSAVIAGVSVYLAPLYSRAYAALFEQKILQSPNWDAHEKRIRFRIDGRAKVMGQKVFARDIRAVDMPH WPQQQAHAFILRVTKADRLFEGIDLSLLGDDLQPDRLVTAEDLARDGLAFPAFYGDDMLLPIGKTPAYLGQAVAILIYHD FARFRFAKDKLKFREETLRYGAETGPLERDPWGTFRYVRVGGDKPFDDDRFSSLKDTPIFPVSMKKHLPVWPEGREGGKL DQEGMYYAGMIANELQTPPEDWLVMSRRYTTQSVDTSALEPDNANGWYDATTQTLHLVVPTQSPQEVADEMPRMLAKHNP PVKQLILHPCYTVGYGSKDHFNFPYYGAVAAMYGDGHPVRLANDRFEQFQTALKRHAFDMNYRIAVNRQTGVLQSFHGEM TADGGGRSNFTPSVVMVAATAAQSIYYFPKSDLSAVGLASRAIDAGSARGYGTLQSMAATEMMVDELAAELKIDPIEFRL RNVLKSGMKNTQGAIPAGAIRADEVLEKAAKHEMWLQRAQRKAEFESRHPGKRYGVGFGCVQKDFGTGAETSFARVELGE DGRIMLHHSGAEMGTGMSTSQSVLCAQWLGKPADEAHFSVTDWSVLPMVTSGDPYIMSQAEQDKLQANPAWTPSYCSPSS ASNSAYYFSHSTREAARLIFDHGLWPAAMAIWQSGPGGGQAAPLVVRREDARWVEGGLTAAGMEVLSLERLAKQAYQMGG ITGAAVHVFNRWQWAEADFTLSGKSERLPIDGLAVRNANGEFKTLSRSQAYYPPTQRNNAAVTYYSAVGTLAEVAVDIAT GQVELLNHHSIMECGNLIVPELVSGQLQGGLAMGIGHALHEYLPLYEDGPGNGTWNFNRYHLPRASDVAVWKQTDDILPA LSETDPPKGMAEVVMIPVVAALVNAIADATGHRFRDLPVRAENIREVLQ >Mature_928_residues SNFSPSRRRFIKSAVIAGVSVYLAPLYSRAYAALFEQKILQSPNWDAHEKRIRFRIDGRAKVMGQKVFARDIRAVDMPHW PQQQAHAFILRVTKADRLFEGIDLSLLGDDLQPDRLVTAEDLARDGLAFPAFYGDDMLLPIGKTPAYLGQAVAILIYHDF ARFRFAKDKLKFREETLRYGAETGPLERDPWGTFRYVRVGGDKPFDDDRFSSLKDTPIFPVSMKKHLPVWPEGREGGKLD QEGMYYAGMIANELQTPPEDWLVMSRRYTTQSVDTSALEPDNANGWYDATTQTLHLVVPTQSPQEVADEMPRMLAKHNPP VKQLILHPCYTVGYGSKDHFNFPYYGAVAAMYGDGHPVRLANDRFEQFQTALKRHAFDMNYRIAVNRQTGVLQSFHGEMT ADGGGRSNFTPSVVMVAATAAQSIYYFPKSDLSAVGLASRAIDAGSARGYGTLQSMAATEMMVDELAAELKIDPIEFRLR NVLKSGMKNTQGAIPAGAIRADEVLEKAAKHEMWLQRAQRKAEFESRHPGKRYGVGFGCVQKDFGTGAETSFARVELGED GRIMLHHSGAEMGTGMSTSQSVLCAQWLGKPADEAHFSVTDWSVLPMVTSGDPYIMSQAEQDKLQANPAWTPSYCSPSSA SNSAYYFSHSTREAARLIFDHGLWPAAMAIWQSGPGGGQAAPLVVRREDARWVEGGLTAAGMEVLSLERLAKQAYQMGGI TGAAVHVFNRWQWAEADFTLSGKSERLPIDGLAVRNANGEFKTLSRSQAYYPPTQRNNAAVTYYSAVGTLAEVAVDIATG QVELLNHHSIMECGNLIVPELVSGQLQGGLAMGIGHALHEYLPLYEDGPGNGTWNFNRYHLPRASDVAVWKQTDDILPAL SETDPPKGMAEVVMIPVVAALVNAIADATGHRFRDLPVRAENIREVLQ
Specific function: Presumed to be a dehydrogenase, but possibly an oxidase. Participates in limited purine salvage (requires aspartate) but does not support aerobic growth on purines as the sole carbon source (purine catabolism) [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1789230, Length=378, Percent_Identity=26.984126984127, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1789246, Length=345, Percent_Identity=22.0289855072464, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17540638, Length=330, Percent_Identity=22.4242424242424, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI17737937, Length=323, Percent_Identity=23.8390092879257, Blast_Score=71, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.17.1.4 [H]
Molecular weight: Translated: 102699; Mature: 102568
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNFSPSRRRFIKSAVIAGVSVYLAPLYSRAYAALFEQKILQSPNWDAHEKRIRFRIDGR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC AKVMGQKVFARDIRAVDMPHWPQQQAHAFILRVTKADRLFEGIDLSLLGDDLQPDRLVTA HHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEEECHHHHHCCCCEEEECCCCCCCCEECH EDLARDGLAFPAFYGDDMLLPIGKTPAYLGQAVAILIYHDFARFRFAKDKLKFREETLRY HHHHHCCCCCCEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GAETGPLERDPWGTFRYVRVGGDKPFDDDRFSSLKDTPIFPVSMKKHLPVWPEGREGGKL CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCEECHHCCCCCCCCCCCCCCC DQEGMYYAGMIANELQTPPEDWLVMSRRYTTQSVDTSALEPDNANGWYDATTQTLHLVVP CCCCCEEEEEHHHHHCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEC TQSPQEVADEMPRMLAKHNPPVKQLILHPCYTVGYGSKDHFNFPYYGAVAAMYGDGHPVR CCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCEECCCCCCCCCCCHHHHHEEEECCCCEEE LANDRFEQFQTALKRHAFDMNYRIAVNRQTGVLQSFHGEMTADGGGRSNFTPSVVMVAAT ECHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHCCCEECCCCCCCCCCCCEEEEEEH AAQSIYYFPKSDLSAVGLASRAIDAGSARGYGTLQSMAATEMMVDELAAELKIDPIEFRL HHHHEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RNVLKSGMKNTQGAIPAGAIRADEVLEKAAKHEMWLQRAQRKAEFESRHPGKRYGVGFGC HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH VQKDFGTGAETSFARVELGEDGRIMLHHSGAEMGTGMSTSQSVLCAQWLGKPADEAHFSV HHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEE TDWSVLPMVTSGDPYIMSQAEQDKLQANPAWTPSYCSPSSASNSAYYFSHSTREAARLIF ECCEEEEEEECCCCCEECCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH DHGLWPAAMAIWQSGPGGGQAAPLVVRREDARWVEGGLTAAGMEVLSLERLAKQAYQMGG HCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCC ITGAAVHVFNRWQWAEADFTLSGKSERLPIDGLAVRNANGEFKTLSRSQAYYPPTQRNNA CCHHHHHHHHCCEECCCCEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCC AVTYYSAVGTLAEVAVDIATGQVELLNHHSIMECGNLIVPELVSGQLQGGLAMGIGHALH EEEEHHHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCHHHHHHCCHHCCCHHHHHHHHHH EYLPLYEDGPGNGTWNFNRYHLPRASDVAVWKQTDDILPALSETDPPKGMAEVVMIPVVA HHCCCEECCCCCCCCCCCEEECCCCCCEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHH ALVNAIADATGHRFRDLPVRAENIREVLQ HHHHHHHHHCCCCEECCCCCHHHHHHHHC >Mature Secondary Structure SNFSPSRRRFIKSAVIAGVSVYLAPLYSRAYAALFEQKILQSPNWDAHEKRIRFRIDGR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC AKVMGQKVFARDIRAVDMPHWPQQQAHAFILRVTKADRLFEGIDLSLLGDDLQPDRLVTA HHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEEECHHHHHCCCCEEEECCCCCCCCEECH EDLARDGLAFPAFYGDDMLLPIGKTPAYLGQAVAILIYHDFARFRFAKDKLKFREETLRY HHHHHCCCCCCEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GAETGPLERDPWGTFRYVRVGGDKPFDDDRFSSLKDTPIFPVSMKKHLPVWPEGREGGKL CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCEECHHCCCCCCCCCCCCCCC DQEGMYYAGMIANELQTPPEDWLVMSRRYTTQSVDTSALEPDNANGWYDATTQTLHLVVP CCCCCEEEEEHHHHHCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEC TQSPQEVADEMPRMLAKHNPPVKQLILHPCYTVGYGSKDHFNFPYYGAVAAMYGDGHPVR CCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCEECCCCCCCCCCCHHHHHEEEECCCCEEE LANDRFEQFQTALKRHAFDMNYRIAVNRQTGVLQSFHGEMTADGGGRSNFTPSVVMVAAT ECHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHCCCEECCCCCCCCCCCCEEEEEEH AAQSIYYFPKSDLSAVGLASRAIDAGSARGYGTLQSMAATEMMVDELAAELKIDPIEFRL HHHHEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RNVLKSGMKNTQGAIPAGAIRADEVLEKAAKHEMWLQRAQRKAEFESRHPGKRYGVGFGC HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH VQKDFGTGAETSFARVELGEDGRIMLHHSGAEMGTGMSTSQSVLCAQWLGKPADEAHFSV HHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEE TDWSVLPMVTSGDPYIMSQAEQDKLQANPAWTPSYCSPSSASNSAYYFSHSTREAARLIF ECCEEEEEEECCCCCEECCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH DHGLWPAAMAIWQSGPGGGQAAPLVVRREDARWVEGGLTAAGMEVLSLERLAKQAYQMGG HCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCC ITGAAVHVFNRWQWAEADFTLSGKSERLPIDGLAVRNANGEFKTLSRSQAYYPPTQRNNA CCHHHHHHHHCCEECCCCEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCC AVTYYSAVGTLAEVAVDIATGQVELLNHHSIMECGNLIVPELVSGQLQGGLAMGIGHALH EEEEHHHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCHHHHHHCCHHCCCHHHHHHHHHH EYLPLYEDGPGNGTWNFNRYHLPRASDVAVWKQTDDILPALSETDPPKGMAEVVMIPVVA HHCCCEECCCCCCCCCCCEEECCCCCCEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHH ALVNAIADATGHRFRDLPVRAENIREVLQ HHHHHHHHHCCCCEECCCCCHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]