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The map label for this gene is ydfH [H]

Identifier: 157371802

GI number: 157371802

Start: 3945017

End: 3945703

Strand: Direct

Name: ydfH [H]

Synonym: Spro_3567

Alternate gene names: 157371802

Gene position: 3945017-3945703 (Clockwise)

Preceding gene: 157371801

Following gene: 157371803

Centisome position: 72.4

GC content: 55.46

Gene sequence:

>687_bases
ATGTCTGAATCCTACAATCTCACTAATAGCCTCCCGGTTAATCAGCAGATCTACCGTTTCCTGCGTAAGGATATCGTCGA
CTGCACCATTCCCCCCGGCACGCTGTTGTCAGAGAAAGAGATCTCCACCCGCTTTAGCGTTTCTCGCCAACCGGTGCGCG
AAGCCTTTATCAAGCTGGCGGAGGCCGGATTGGTGCAGATCTTGCCGCAGCGCGGGACTTTCGTGATGAAGATTTCCGCC
AAACGGGTGGCCGACGGACGCTTTATCCGTCAGGCGGTAGAATGCGCAATTGTGCGCCGTGCGGCAGAACGCATCACCCA
GGAACAGCTGATGACGCTGGAGCATAATTTGCACCGTCAGGAGCTGGCGGCGCAGAACAAGCAGACGCGTGAATTCCTGG
TGTTGGACGATGAATTTCATCAGTTGCTCACCCAGTTTGCCGAATGCCCGTTAGCCTGGGAGACCATAGAAACCATCAAG
GCCACCATGGACCGGGTGCGTTTTCTCAGCCTGAGCGAAGTATCACCACCGGAAAGCCTGCTGCAGCAGCATTACCGCAT
TTTTGCCGCGTTGAAAGCGCAGGATGCCGATGCCGCCGAGCGTGCCATCCATGAGCACCTGCAAGAGATGATCTACTCCA
TTACCCCCATCTCTTTGCAAAATACCGAGTGGTTCGACGCCGAATAG

Upstream 100 bases:

>100_bases
TCAGCGTTAGGTTGCTGCATTAGGAATTATCCGCCGCGGCAGCAAGATAATCTGCTAGTATGGTGGCATCCAAATCCAAG
CCAAATGACCGATCGTCACC

Downstream 100 bases:

>100_bases
TCAAGCACCGACCTTCCAGGGGGCGATCGCCCCCCGCTATTTGGCTTTGCAAATGGCATTTCCTCTCAATCGCATCTATT
GTTTCTCCTTGCCATCAGGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSESYNLTNSLPVNQQIYRFLRKDIVDCTIPPGTLLSEKEISTRFSVSRQPVREAFIKLAEAGLVQILPQRGTFVMKISA
KRVADGRFIRQAVECAIVRRAAERITQEQLMTLEHNLHRQELAAQNKQTREFLVLDDEFHQLLTQFAECPLAWETIETIK
ATMDRVRFLSLSEVSPPESLLQQHYRIFAALKAQDADAAERAIHEHLQEMIYSITPISLQNTEWFDAE

Sequences:

>Translated_228_residues
MSESYNLTNSLPVNQQIYRFLRKDIVDCTIPPGTLLSEKEISTRFSVSRQPVREAFIKLAEAGLVQILPQRGTFVMKISA
KRVADGRFIRQAVECAIVRRAAERITQEQLMTLEHNLHRQELAAQNKQTREFLVLDDEFHQLLTQFAECPLAWETIETIK
ATMDRVRFLSLSEVSPPESLLQQHYRIFAALKAQDADAAERAIHEHLQEMIYSITPISLQNTEWFDAE
>Mature_227_residues
SESYNLTNSLPVNQQIYRFLRKDIVDCTIPPGTLLSEKEISTRFSVSRQPVREAFIKLAEAGLVQILPQRGTFVMKISAK
RVADGRFIRQAVECAIVRRAAERITQEQLMTLEHNLHRQELAAQNKQTREFLVLDDEFHQLLTQFAECPLAWETIETIKA
TMDRVRFLSLSEVSPPESLLQQHYRIFAALKAQDADAAERAIHEHLQEMIYSITPISLQNTEWFDAE

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=228, Percent_Identity=60.0877192982456, Blast_Score=285, Evalue=1e-78,
Organism=Escherichia coli, GI48994955, Length=204, Percent_Identity=30.8823529411765, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26284; Mature: 26153

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESYNLTNSLPVNQQIYRFLRKDIVDCTIPPGTLLSEKEISTRFSVSRQPVREAFIKLA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EAGLVQILPQRGTFVMKISAKRVADGRFIRQAVECAIVRRAAERITQEQLMTLEHNLHRQ
HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELAAQNKQTREFLVLDDEFHQLLTQFAECPLAWETIETIKATMDRVRFLSLSEVSPPESL
HHHHCCCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LQQHYRIFAALKAQDADAAERAIHEHLQEMIYSITPISLQNTEWFDAE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SESYNLTNSLPVNQQIYRFLRKDIVDCTIPPGTLLSEKEISTRFSVSRQPVREAFIKLA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EAGLVQILPQRGTFVMKISAKRVADGRFIRQAVECAIVRRAAERITQEQLMTLEHNLHRQ
HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELAAQNKQTREFLVLDDEFHQLLTQFAECPLAWETIETIKATMDRVRFLSLSEVSPPESL
HHHHCCCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LQQHYRIFAALKAQDADAAERAIHEHLQEMIYSITPISLQNTEWFDAE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]