| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
Click here to switch to the map view.
The map label for this gene is tktA [H]
Identifier: 157371717
GI number: 157371717
Start: 3853104
End: 3855098
Strand: Direct
Name: tktA [H]
Synonym: Spro_3480
Alternate gene names: 157371717
Gene position: 3853104-3855098 (Clockwise)
Preceding gene: 157371716
Following gene: 157371718
Centisome position: 70.71
GC content: 62.36
Gene sequence:
>1995_bases ATGTCCTCTCGTAAAGAGCTTGCCAACGCCATCCGCGCACTCAGCATGGACGCCGTACAAAAAGCAAATTCCGGCCACCC GGGTGCACCTATGGGCATGGCGGACATCGCCGAAGTCCTGTGGCGTGACTACCTGAACCACAACCCGACCAACCCGCACT GGGCTGACCGTGACCGCTTCGTCCTCTCCAACGGCCATGGCTCCATGCTGATTTACAGCCTGTTGCACCTCACCGGCTAC GACCTGCCGATGAGCGAGCTGGAAAACTTCCGCCAGCTGCACTCCAAAACCCCGGGCCACCCGGAATACGGCTACACCCC AGGCGTGGAAACCACCACCGGCCCACTGGGTCAGGGCATCGCCAACGCCGTCGGTTTCGCCATTGCCGAACGCACCCTGG GCGCGCAGTTCAACCGTCCGGGTCATGACATCGTCGACCACCACACCTACGCTTTTATGGGCGACGGCTGCATGATGGAA GGCATCTCCCACGAAGTCTGTTCGCTGGCCGGTACCCTCAAGCTCGGCAAACTGACCGCGTTCTACGATGACAACGGCAT CTCCATCGACGGTCACGTCGAAGGCTGGTTCACCGACAACACCGCCGAGCGCTTTGAAGCCTACGGCTGGCACGTGGTGC GTCACGTTGACGGCCACAACCCGGACGCCATCAAGGCCGCCATTGAAGAAGCCCGCAAGGTCACCGACAAGCCGTCGCTG CTGATGTGCAAAACCGTGATTGGTTTCGGCTCCCCGAACAAGGCCGGTACCCACGACGTGCACGGTGCTGCGCTGGGCGC CGCCGAAGTGGCCGCCACCCGCGAAGCGCTGGGCTGGAAATACGCCGCCTTCGAAATCCCGCAGGACATCTATGCCCAGT GGGATGCCAAAGAAGCCGGCAAGGCCAAAGAAGCGGCCTGGAACGACAAGTTCGCCGCCTACGCCAAAGCCTTCCCGGAA CTGGCTGCCGAGTTCAAACGCCGTGTGAACGGTGAACTGCCGGCCAACTGGAAAGCCGAAGCCAAAGCCTTCGTGGAAAA ACTGCAGGCCAACCCGGCCAATATCGCCAGCCGCAAGGCCTCGCAGAACGCACTGGAAACCTTCGGCAAGGTGCTGCCTG AATTCCTCGGCGGCTCCGCTGACCTGGCACCAAGCAACCTGACCATGTGGTCCGGCTCCAAGCCACTCAACGAAGACCTG GCGGGTAACTACATCCACTACGGCGTGCGCGAGTTCGGCATGACCGCCATCACCAACGGCATCGCGCTGCACGGCGGCTT CCTGCCGTACTCGGCGACCTTCCTGATGTTCGTGGAATACGCCCGTAATGCGGTGCGTATGGCGGCGCTGATGAAAATCC GCAACGTGTTCGTCTACACCCATGACTCCATCGGTCTGGGCGAAGACGGCCCGACGCACCAGCCGGTTGAGCAGATGGCC AGCCTGCGCGTGACCCCGAACATGAGCACCTGGCGTCCGTGTGACCAGGTGGAATCGGCGGTCGCCTGGCAGTACGGCAT CGAGCGCAACGACGGCCCGACCACGCTGATTTTCTCACGTCAGAACCTGACCCAGCAGCCGCGTAGCGCAGAGCAACTGG CCAACGTTTACCGTGGCGGTTATGTCCTGAAGGACTGCGCCGGGACGCCGGACGTCATTCTGATTGCCACCGGTTCGGAA GTGGGTATCACCGTGGAAGCGGCAGACCAGCTGACTGCGGCGGGCCGCAAGGTGCGCGTGGTCTCCATGCCGTCTACCGA CGCGTTCGACAAGCAGGATGCGGCGTACCGTGAATCCGTGCTGCCGGCGGCAGTGAGCGCACGCGTGGCGGTAGAAGCAG GTATCGCGGACTACTGGTACAAGTATGTGGGCCTGAACGGCGCCATCGTGGGCATGACCAGCTTCGGCGAGTCTGCCCCG GCAGAGCAGCTGTTCAAAGAGTTTGGCTTCACCGTGGACAACGTGGTAGCCAAGGCGCAGGCACTGCTGAAATAG
Upstream 100 bases:
>100_bases CGGTTGAAAAACTGGCCGAAGGTATCCGCCTGTTCGCCGTTGACCAGCAAAAGCTGGAAGATATGCTGGCCGCTGAACTG TAATCACACTGGAGTAAAAC
Downstream 100 bases:
>100_bases TTCCCTCTCCCCCTGGAGAGGATGAAGCCATCAGCCCGGCACATTGCCGGGCTTTTTCGTTCTGGCTGAAGCTCTTTTTA TATCTCATATTCGCCCTTAC
Product: transketolase
Products: NA
Alternate protein names: TK 1 [H]
Number of amino acids: Translated: 664; Mature: 663
Protein sequence:
>664_residues MSSRKELANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYLNHNPTNPHWADRDRFVLSNGHGSMLIYSLLHLTGY DLPMSELENFRQLHSKTPGHPEYGYTPGVETTTGPLGQGIANAVGFAIAERTLGAQFNRPGHDIVDHHTYAFMGDGCMME GISHEVCSLAGTLKLGKLTAFYDDNGISIDGHVEGWFTDNTAERFEAYGWHVVRHVDGHNPDAIKAAIEEARKVTDKPSL LMCKTVIGFGSPNKAGTHDVHGAALGAAEVAATREALGWKYAAFEIPQDIYAQWDAKEAGKAKEAAWNDKFAAYAKAFPE LAAEFKRRVNGELPANWKAEAKAFVEKLQANPANIASRKASQNALETFGKVLPEFLGGSADLAPSNLTMWSGSKPLNEDL AGNYIHYGVREFGMTAITNGIALHGGFLPYSATFLMFVEYARNAVRMAALMKIRNVFVYTHDSIGLGEDGPTHQPVEQMA SLRVTPNMSTWRPCDQVESAVAWQYGIERNDGPTTLIFSRQNLTQQPRSAEQLANVYRGGYVLKDCAGTPDVILIATGSE VGITVEAADQLTAAGRKVRVVSMPSTDAFDKQDAAYRESVLPAAVSARVAVEAGIADYWYKYVGLNGAIVGMTSFGESAP AEQLFKEFGFTVDNVVAKAQALLK
Sequences:
>Translated_664_residues MSSRKELANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYLNHNPTNPHWADRDRFVLSNGHGSMLIYSLLHLTGY DLPMSELENFRQLHSKTPGHPEYGYTPGVETTTGPLGQGIANAVGFAIAERTLGAQFNRPGHDIVDHHTYAFMGDGCMME GISHEVCSLAGTLKLGKLTAFYDDNGISIDGHVEGWFTDNTAERFEAYGWHVVRHVDGHNPDAIKAAIEEARKVTDKPSL LMCKTVIGFGSPNKAGTHDVHGAALGAAEVAATREALGWKYAAFEIPQDIYAQWDAKEAGKAKEAAWNDKFAAYAKAFPE LAAEFKRRVNGELPANWKAEAKAFVEKLQANPANIASRKASQNALETFGKVLPEFLGGSADLAPSNLTMWSGSKPLNEDL AGNYIHYGVREFGMTAITNGIALHGGFLPYSATFLMFVEYARNAVRMAALMKIRNVFVYTHDSIGLGEDGPTHQPVEQMA SLRVTPNMSTWRPCDQVESAVAWQYGIERNDGPTTLIFSRQNLTQQPRSAEQLANVYRGGYVLKDCAGTPDVILIATGSE VGITVEAADQLTAAGRKVRVVSMPSTDAFDKQDAAYRESVLPAAVSARVAVEAGIADYWYKYVGLNGAIVGMTSFGESAP AEQLFKEFGFTVDNVVAKAQALLK >Mature_663_residues SSRKELANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYLNHNPTNPHWADRDRFVLSNGHGSMLIYSLLHLTGYD LPMSELENFRQLHSKTPGHPEYGYTPGVETTTGPLGQGIANAVGFAIAERTLGAQFNRPGHDIVDHHTYAFMGDGCMMEG ISHEVCSLAGTLKLGKLTAFYDDNGISIDGHVEGWFTDNTAERFEAYGWHVVRHVDGHNPDAIKAAIEEARKVTDKPSLL MCKTVIGFGSPNKAGTHDVHGAALGAAEVAATREALGWKYAAFEIPQDIYAQWDAKEAGKAKEAAWNDKFAAYAKAFPEL AAEFKRRVNGELPANWKAEAKAFVEKLQANPANIASRKASQNALETFGKVLPEFLGGSADLAPSNLTMWSGSKPLNEDLA GNYIHYGVREFGMTAITNGIALHGGFLPYSATFLMFVEYARNAVRMAALMKIRNVFVYTHDSIGLGEDGPTHQPVEQMAS LRVTPNMSTWRPCDQVESAVAWQYGIERNDGPTTLIFSRQNLTQQPRSAEQLANVYRGGYVLKDCAGTPDVILIATGSEV GITVEAADQLTAAGRKVRVVSMPSTDAFDKQDAAYRESVLPAAVSARVAVEAGIADYWYKYVGLNGAIVGMTSFGESAPA EQLFKEFGFTVDNVVAKAQALLK
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=693, Percent_Identity=26.2626262626263, Blast_Score=160, Evalue=5e-39, Organism=Homo sapiens, GI4507521, Length=693, Percent_Identity=26.2626262626263, Blast_Score=160, Evalue=5e-39, Organism=Homo sapiens, GI133778974, Length=680, Percent_Identity=25.2941176470588, Blast_Score=140, Evalue=3e-33, Organism=Escherichia coli, GI48994911, Length=663, Percent_Identity=84.4645550527903, Blast_Score=1187, Evalue=0.0, Organism=Escherichia coli, GI1788808, Length=661, Percent_Identity=72.9198184568835, Blast_Score=1039, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=675, Percent_Identity=24, Blast_Score=146, Evalue=4e-35, Organism=Saccharomyces cerevisiae, GI6325331, Length=671, Percent_Identity=48.4351713859911, Blast_Score=595, Evalue=1e-171, Organism=Saccharomyces cerevisiae, GI6319593, Length=672, Percent_Identity=45.5357142857143, Blast_Score=560, Evalue=1e-160, Organism=Drosophila melanogaster, GI45551847, Length=607, Percent_Identity=27.3476112026359, Blast_Score=163, Evalue=4e-40, Organism=Drosophila melanogaster, GI45550715, Length=607, Percent_Identity=27.3476112026359, Blast_Score=163, Evalue=4e-40, Organism=Drosophila melanogaster, GI24645119, Length=573, Percent_Identity=26.7015706806283, Blast_Score=138, Evalue=1e-32, Organism=Drosophila melanogaster, GI24666278, Length=687, Percent_Identity=24.0174672489083, Blast_Score=134, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR020826 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 72071; Mature: 71940
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS00801 TRANSKETOLASE_1 ; PS00802 TRANSKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRKELANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYLNHNPTNPHWADRDRF CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCE VLSNGHGSMLIYSLLHLTGYDLPMSELENFRQLHSKTPGHPEYGYTPGVETTTGPLGQGI EEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH ANAVGFAIAERTLGAQFNRPGHDIVDHHTYAFMGDGCMMEGISHEVCSLAGTLKLGKLTA HHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEECCCHHHHCCHHHHHHHHHHEEECCEEE FYDDNGISIDGHVEGWFTDNTAERFEAYGWHVVRHVDGHNPDAIKAAIEEARKVTDKPSL EECCCCEEECCCEEEEEECCHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC LMCKTVIGFGSPNKAGTHDVHGAALGAAEVAATREALGWKYAAFEIPQDIYAQWDAKEAG EEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCHHCC KAKEAAWNDKFAAYAKAFPELAAEFKRRVNGELPANWKAEAKAFVEKLQANPANIASRKA CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH SQNALETFGKVLPEFLGGSADLAPSNLTMWSGSKPLNEDLAGNYIHYGVREFGMTAITNG HHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCC IALHGGFLPYSATFLMFVEYARNAVRMAALMKIRNVFVYTHDSIGLGEDGPTHQPVEQMA EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHH SLRVTPNMSTWRPCDQVESAVAWQYGIERNDGPTTLIFSRQNLTQQPRSAEQLANVYRGG HEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCC YVLKDCAGTPDVILIATGSEVGITVEAADQLTAAGRKVRVVSMPSTDAFDKQDAAYRESV EEEECCCCCCCEEEEEECCCCEEEEECHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH LPAAVSARVAVEAGIADYWYKYVGLNGAIVGMTSFGESAPAEQLFKEFGFTVDNVVAKAQ HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHH ALLK HHCC >Mature Secondary Structure SSRKELANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYLNHNPTNPHWADRDRF CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCE VLSNGHGSMLIYSLLHLTGYDLPMSELENFRQLHSKTPGHPEYGYTPGVETTTGPLGQGI EEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH ANAVGFAIAERTLGAQFNRPGHDIVDHHTYAFMGDGCMMEGISHEVCSLAGTLKLGKLTA HHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEECCCHHHHCCHHHHHHHHHHEEECCEEE FYDDNGISIDGHVEGWFTDNTAERFEAYGWHVVRHVDGHNPDAIKAAIEEARKVTDKPSL EECCCCEEECCCEEEEEECCHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC LMCKTVIGFGSPNKAGTHDVHGAALGAAEVAATREALGWKYAAFEIPQDIYAQWDAKEAG EEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCHHCC KAKEAAWNDKFAAYAKAFPELAAEFKRRVNGELPANWKAEAKAFVEKLQANPANIASRKA CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH SQNALETFGKVLPEFLGGSADLAPSNLTMWSGSKPLNEDLAGNYIHYGVREFGMTAITNG HHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCC IALHGGFLPYSATFLMFVEYARNAVRMAALMKIRNVFVYTHDSIGLGEDGPTHQPVEQMA EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHH SLRVTPNMSTWRPCDQVESAVAWQYGIERNDGPTTLIFSRQNLTQQPRSAEQLANVYRGG HEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCC YVLKDCAGTPDVILIATGSEVGITVEAADQLTAAGRKVRVVSMPSTDAFDKQDAAYRESV EEEECCCCCCCEEEEEECCCCEEEEECHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH LPAAVSARVAVEAGIADYWYKYVGLNGAIVGMTSFGESAPAEQLFKEFGFTVDNVVAKAQ HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHH ALLK HHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8241274; 9278503; 2153656 [H]