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The map label for this gene is allS [H]

Identifier: 157371648

GI number: 157371648

Start: 3771928

End: 3772818

Strand: Direct

Name: allS [H]

Synonym: Spro_3411

Alternate gene names: 157371648

Gene position: 3771928-3772818 (Clockwise)

Preceding gene: 157371645

Following gene: 157371650

Centisome position: 69.22

GC content: 61.84

Gene sequence:

>891_bases
ATGCGCTATTCCCCTGAAGCCCTGCAGGCGTTTGTTGAAGCTGCCGCCCTCGGCTCGTTCTCTGCCGCCGCCCGTAAGCT
ACGCAAAAGCCAGTCAACCATCAGTACCGCGATCGCCAACCTGGAGGCCGATCTCGGGCTGCTCCTGTTCGATCGCCAGG
CGCGCCAACCGGTGTTGACCGCCGCCGGCCACAAAGTACTGGGCCATGTGCAGGAGATCCTTGCCGCCAGCGAACGGCTG
GACGCACTGAGCATTCGGCTGGCGGACAATATCGAGCCGCGCCTCAGCCTGGTGTTCTCCGATACCTATCAGCCGAAACA
CCATGATCGACTGATGCAACTTTTCGAGCAGCGCTATCAGGATATCGAACTGGAGTGGATGATCGCCGAAGACGGCGACG
TGCTTGACCTGTTGCAAAGCGGCCGCGCGCATCTCGGCATGGTGGAGGTTCAGGCCAGTTACCCGCCGGACATCGGGTTT
GCGCGGCTGCCGGAACAAACGGAAATGGGGCTGTTCGTCACCCACTCGCACCCGCTGGCACAGACGGCCTCCCCCACGCC
CGAACAACTGTCCAGCACGCGCCAACTCATCCTCAATACCTATAGCGGCGCTGAAGCCGCCCGCTCCGGCGGTCTGGTGT
GGTCAGCTCCCAGCTACCTGCTATTGCTGGAAATGGCGGAACAAGGGTTTGGCTGGGCCGTACTGCCGAACTGGTTGGTA
AAACAATACGGCCATGACAAGTTGACCGAGCTCAAACCCCGCGGCTGGCCGAAGCTGATTTCAGTGGATGCGGTATGGTC
GAAACTGACCCCGCCGGGGCCGGCGGGGTATTGGTTACTGGAACGCCTGCTGGAGAACGCAGCGGATCAGGCGGCCGCGT
TACGCGAGTGA

Upstream 100 bases:

>100_bases
TACATCACCTGTTTTTTTACTGTTATTGCTAAAGTCAGGTGATTATCATCGATTTTTTGGGTAGATTGAAAATAGGTTCC
ATCGATAAAGTAGATATATC

Downstream 100 bases:

>100_bases
ATGGCGCGTGAAACGCTATCGAGCAGTTCGGGAATATCCATCTTCGGCAGCATCACTTCCACAAAGGCCAGTTGTGGGCT
GTCGCCAACTTCTTTCAGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MRYSPEALQAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLLLFDRQARQPVLTAAGHKVLGHVQEILAASERL
DALSIRLADNIEPRLSLVFSDTYQPKHHDRLMQLFEQRYQDIELEWMIAEDGDVLDLLQSGRAHLGMVEVQASYPPDIGF
ARLPEQTEMGLFVTHSHPLAQTASPTPEQLSSTRQLILNTYSGAEAARSGGLVWSAPSYLLLLEMAEQGFGWAVLPNWLV
KQYGHDKLTELKPRGWPKLISVDAVWSKLTPPGPAGYWLLERLLENAADQAAALRE

Sequences:

>Translated_296_residues
MRYSPEALQAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLLLFDRQARQPVLTAAGHKVLGHVQEILAASERL
DALSIRLADNIEPRLSLVFSDTYQPKHHDRLMQLFEQRYQDIELEWMIAEDGDVLDLLQSGRAHLGMVEVQASYPPDIGF
ARLPEQTEMGLFVTHSHPLAQTASPTPEQLSSTRQLILNTYSGAEAARSGGLVWSAPSYLLLLEMAEQGFGWAVLPNWLV
KQYGHDKLTELKPRGWPKLISVDAVWSKLTPPGPAGYWLLERLLENAADQAAALRE
>Mature_296_residues
MRYSPEALQAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLLLFDRQARQPVLTAAGHKVLGHVQEILAASERL
DALSIRLADNIEPRLSLVFSDTYQPKHHDRLMQLFEQRYQDIELEWMIAEDGDVLDLLQSGRAHLGMVEVQASYPPDIGF
ARLPEQTEMGLFVTHSHPLAQTASPTPEQLSSTRQLILNTYSGAEAARSGGLVWSAPSYLLLLEMAEQGFGWAVLPNWLV
KQYGHDKLTELKPRGWPKLISVDAVWSKLTPPGPAGYWLLERLLENAADQAAALRE

Specific function: Positive regulator essential for the expression of allD operon. Binds to the allD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=282, Percent_Identity=26.241134751773, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786713, Length=118, Percent_Identity=33.8983050847458, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786508, Length=256, Percent_Identity=25, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32746; Mature: 32746

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSPEALQAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLLLFDRQARQPVLT
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHCCCHHH
AAGHKVLGHVQEILAASERLDALSIRLADNIEPRLSLVFSDTYQPKHHDRLMQLFEQRYQ
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
DIELEWMIAEDGDVLDLLQSGRAHLGMVEVQASYPPDIGFARLPEQTEMGLFVTHSHPLA
CCEEEEEEECCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCC
QTASPTPEQLSSTRQLILNTYSGAEAARSGGLVWSAPSYLLLLEMAEQGFGWAVLPNWLV
CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCEEECCCHHHHHHHHHHCCCCEEHHHHHHH
KQYGHDKLTELKPRGWPKLISVDAVWSKLTPPGPAGYWLLERLLENAADQAAALRE
HHCCCCHHHHCCCCCCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRYSPEALQAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLLLFDRQARQPVLT
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHCCCHHH
AAGHKVLGHVQEILAASERLDALSIRLADNIEPRLSLVFSDTYQPKHHDRLMQLFEQRYQ
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
DIELEWMIAEDGDVLDLLQSGRAHLGMVEVQASYPPDIGFARLPEQTEMGLFVTHSHPLA
CCEEEEEEECCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCC
QTASPTPEQLSSTRQLILNTYSGAEAARSGGLVWSAPSYLLLLEMAEQGFGWAVLPNWLV
CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCEEECCCHHHHHHHHHHCCCCEEHHHHHHH
KQYGHDKLTELKPRGWPKLISVDAVWSKLTPPGPAGYWLLERLLENAADQAAALRE
HHCCCCHHHHCCCCCCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA