Click here to switch to the map view.

The map label for this gene is ytbD [H]

Identifier: 157371371

GI number: 157371371

Start: 3448591

End: 3449760

Strand: Direct

Name: ytbD [H]

Synonym: Spro_3132

Alternate gene names: 157371371

Gene position: 3448591-3449760 (Clockwise)

Preceding gene: 157371370

Following gene: 157371372

Centisome position: 63.29

GC content: 53.16

Gene sequence:

>1170_bases
ATGCCATTAGCTCTATGGGCGCTGGCGATAGGTGCATTCGGTATCGGAACCACTGAATTCATCATTGCCGGGCTGCTCCC
CGTCATTGCCGTAGATTTTAACGTCACCATCCCCGTTGCCGGCTATCTGGCGACTTCTTATGCGCTGGGCGTCTTCGTCG
GCGCACCGGCTCTTATTATTCTGGGTTCAAAAGTCCCGCGTAAAGCCATGCTGGTATTCCTTATGCTGCTTTTCGTAGCC
GGGAACATGGTAACGGCGTTTGCCCCCACGCTTGGCATAGCCATACTGGGCAGAATTATCACGTCCATGACGCACGGTGC
TTTCTTTGGTCTTGGTTCGATTATTGCGGCAGATATGGTTGCACCTTCTAAACGCGTGAGGGCCATTGCGTTCATGTTCA
TGGGGCTAACCGTCGCAAATCTTATTGGCGTACCCGCCGGTACCTGGATTGGTCAACACCTCTCCTGGCGTGATGCTTTT
ATGGCTATAGCCGTGATAGGGGTCATTGCGGTTATCAGCATCGGAATGCTCGTCCCGCACCAGCCAAGGGCACAAAATCA
GAGATTTGCGCATGAGTTTAACGCCTTCAGAAACATAAACGTGCTGCTGGCAATGGGCATTACTGTTTTCGGGCCGGGCG
CATTCTTTACGTCAATTACCTACATCGCGCCGATGATGACGGAGCTGGCAGGATACAGTAAAAGCAGCCTCGCATGGCTG
ATGCTGCTGTTCGGCCTTGGATTGTTTACGGGCAACCAACTTGGCGGCCGATATGCTGACCGCGCCCTTATGCCGATGCT
CTATATCACACTGGCTGCTCAAGCCGTCGTGTTACTGGTATTCAACTTTACAGCGCACAGCCAGGTTATGTCAGCCGTCT
GCATTTTCCTGATGGCTGCGTTTGGATTTGCGACAGTTTCCCCTATCCAGAAACTGGTGATGGATAAAGCACGGGCAGCA
GGTGCACCCACGCTGGCCGCTGCGGTTAATATCGGTCTTTTCAACCTCGGTAATGCTGTAGGAGCCTGGCTTGGTGGCGC
GGTGATTGCTGCGGGGTTCGGTCTGCAATCGCCTAACTGGGCGGGAGCTATATTGTCTGTTATTGCACTGATACTTGCGA
TGTTGTCCGGTCTTACGGATAAAACCGGGCATGCTGCAGAGCTGAATTAG

Upstream 100 bases:

>100_bases
TTATCGTCCCGCTGCTTTTGTTGCCTTACGGGCTGAAATCTTTCCCGTATGCCGGAGCAGTTCAAACGTAAAACATAGTG
TTACTTACAGGATATTTGTT

Downstream 100 bases:

>100_bases
AAGATATGACGACTGGCCAGTGAGAAAGCCATCTGAATCATTCACTGGCCACAATAGTTAACGCAGAATTTATTCGCATT
TCACTTATCAGGTTAAGTAG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MPLALWALAIGAFGIGTTEFIIAGLLPVIAVDFNVTIPVAGYLATSYALGVFVGAPALIILGSKVPRKAMLVFLMLLFVA
GNMVTAFAPTLGIAILGRIITSMTHGAFFGLGSIIAADMVAPSKRVRAIAFMFMGLTVANLIGVPAGTWIGQHLSWRDAF
MAIAVIGVIAVISIGMLVPHQPRAQNQRFAHEFNAFRNINVLLAMGITVFGPGAFFTSITYIAPMMTELAGYSKSSLAWL
MLLFGLGLFTGNQLGGRYADRALMPMLYITLAAQAVVLLVFNFTAHSQVMSAVCIFLMAAFGFATVSPIQKLVMDKARAA
GAPTLAAAVNIGLFNLGNAVGAWLGGAVIAAGFGLQSPNWAGAILSVIALILAMLSGLTDKTGHAAELN

Sequences:

>Translated_389_residues
MPLALWALAIGAFGIGTTEFIIAGLLPVIAVDFNVTIPVAGYLATSYALGVFVGAPALIILGSKVPRKAMLVFLMLLFVA
GNMVTAFAPTLGIAILGRIITSMTHGAFFGLGSIIAADMVAPSKRVRAIAFMFMGLTVANLIGVPAGTWIGQHLSWRDAF
MAIAVIGVIAVISIGMLVPHQPRAQNQRFAHEFNAFRNINVLLAMGITVFGPGAFFTSITYIAPMMTELAGYSKSSLAWL
MLLFGLGLFTGNQLGGRYADRALMPMLYITLAAQAVVLLVFNFTAHSQVMSAVCIFLMAAFGFATVSPIQKLVMDKARAA
GAPTLAAAVNIGLFNLGNAVGAWLGGAVIAAGFGLQSPNWAGAILSVIALILAMLSGLTDKTGHAAELN
>Mature_388_residues
PLALWALAIGAFGIGTTEFIIAGLLPVIAVDFNVTIPVAGYLATSYALGVFVGAPALIILGSKVPRKAMLVFLMLLFVAG
NMVTAFAPTLGIAILGRIITSMTHGAFFGLGSIIAADMVAPSKRVRAIAFMFMGLTVANLIGVPAGTWIGQHLSWRDAFM
AIAVIGVIAVISIGMLVPHQPRAQNQRFAHEFNAFRNINVLLAMGITVFGPGAFFTSITYIAPMMTELAGYSKSSLAWLM
LLFGLGLFTGNQLGGRYADRALMPMLYITLAAQAVVLLVFNFTAHSQVMSAVCIFLMAAFGFATVSPIQKLVMDKARAAG
APTLAAAVNIGLFNLGNAVGAWLGGAVIAAGFGLQSPNWAGAILSVIALILAMLSGLTDKTGHAAELN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=372, Percent_Identity=44.6236559139785, Blast_Score=248, Evalue=5e-67,
Organism=Escherichia coli, GI1786595, Length=388, Percent_Identity=33.5051546391753, Blast_Score=194, Evalue=9e-51,
Organism=Escherichia coli, GI1787808, Length=226, Percent_Identity=27.8761061946903, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI145693198, Length=355, Percent_Identity=26.1971830985915, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40609; Mature: 40478

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLALWALAIGAFGIGTTEFIIAGLLPVIAVDFNVTIPVAGYLATSYALGVFVGAPALII
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCCHHEE
LGSKVPRKAMLVFLMLLFVAGNMVTAFAPTLGIAILGRIITSMTHGAFFGLGSIIAADMV
ECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
APSKRVRAIAFMFMGLTVANLIGVPAGTWIGQHLSWRDAFMAIAVIGVIAVISIGMLVPH
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
QPRAQNQRFAHEFNAFRNINVLLAMGITVFGPGAFFTSITYIAPMMTELAGYSKSSLAWL
CCCCCHHHHHHHHHHHHCCHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
MLLFGLGLFTGNQLGGRYADRALMPMLYITLAAQAVVLLVFNFTAHSQVMSAVCIFLMAA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGFATVSPIQKLVMDKARAAGAPTLAAAVNIGLFNLGNAVGAWLGGAVIAAGFGLQSPNW
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
AGAILSVIALILAMLSGLTDKTGHAAELN
HHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PLALWALAIGAFGIGTTEFIIAGLLPVIAVDFNVTIPVAGYLATSYALGVFVGAPALII
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCCHHEE
LGSKVPRKAMLVFLMLLFVAGNMVTAFAPTLGIAILGRIITSMTHGAFFGLGSIIAADMV
ECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
APSKRVRAIAFMFMGLTVANLIGVPAGTWIGQHLSWRDAFMAIAVIGVIAVISIGMLVPH
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
QPRAQNQRFAHEFNAFRNINVLLAMGITVFGPGAFFTSITYIAPMMTELAGYSKSSLAWL
CCCCCHHHHHHHHHHHHCCHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
MLLFGLGLFTGNQLGGRYADRALMPMLYITLAAQAVVLLVFNFTAHSQVMSAVCIFLMAA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGFATVSPIQKLVMDKARAAGAPTLAAAVNIGLFNLGNAVGAWLGGAVIAAGFGLQSPNW
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
AGAILSVIALILAMLSGLTDKTGHAAELN
HHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]