| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is mppA [H]
Identifier: 157370851
GI number: 157370851
Start: 2874315
End: 2875949
Strand: Reverse
Name: mppA [H]
Synonym: Spro_2611
Alternate gene names: 157370851
Gene position: 2875949-2874315 (Counterclockwise)
Preceding gene: 157370852
Following gene: 157370849
Centisome position: 52.78
GC content: 53.03
Gene sequence:
>1635_bases ATGACGAGAAAAAAAATTCAACAGGGTTTTCGTTTGGCGCTGTGTGCCGTGGCGATTGGCGCAGGGCTGAGCAGCGCCAT GGCGGCTCAGGTTCCCCCAGGTACTACGCTGGCGGAGAAACAGGAAATAGTTCGCCATATCAAAGATGAGCCGGCCTCAC TCGATCCCATTAAAGCGGTTGGCCTGCCGGAAGCACAATTGGCGCGCGATCTGTTTGAAGGGCTGGTGAACCAGGATGCC AACGGCAAGGTGATCCCCGGCGTCGCAACCCGCTGGCAAACCACCGATAACCAAACCTATATTTTCACCCTGCGTAAAGA TGCGCGCTGGTCTAACGGTGACCCTGTCACGGCGAAAGACTTCGTTTACAGTTGGCAGCGGCTGGTTGAGCCGAAGAACT TGTCACCTTTTGCCTGGTTTGCCCAGTTGGCCGGCATCCAAAACGCCGATGAGATCATTACCGGCAAGCTGCCTGCCGAT AAGCTGGGCGTCACCGCGCTGGATGATTACACCTTCAAAGTGCAGTTGAACAAACCGGTGCCGTATTTTGTCAGCCTGAC GGCCAACTTCAGCCTGTTCCCGGTCAACAAGGCGGTGGTAGAGAAATTTGGCAACGACTGGACCAAAGTCGGCAACCTGG TCGGTAACGGCGCGTTTAAACTGCAGGAACGGGTAGTTAACGAGAAACTGGTACTGACGCCAAACGATCACTATTGGGAT CATGCGCATACGGTGTTGACCAAAGTGACCTTTGTGCCGATCAACCAGGAATCCAACGCCACCAAGCGTTATCTGGCCGG CGATATCGATATCACCGAGTCCTTCCCGAAAAACATGTACCAAAAACTGCTGAAAGACATCCCAAACCAGGTCTATACCC CGGATCAGCTCGGCACCTATTATTATGCTTTTAATACCCAACGTGCGCCGACTAACGATGTGCGGGTGCGCAAGGCATTG TCTTACGCTATCGATCGCAAGATTATCGCCGAAAAAGTGTTGGGGACCGGTGAAAAACCGGCTTACCACTTCACCCCGGA TGTCACCGCCGGGTTTAAGCCGGAAGTGAGCCTGTTGCAACAGCAACCACAGGCCGAACTGGACGCCCAGGCCAAGGCGT TGATGCAGGCGGCAGGTTATGGCCCGAACAATCCGCTGAAACTGACGCTGTTGTACAACACTTCGGAAAGCCATCAGAAA ATTGCGATTGCCGTGGCTTCAATGTGGAAGAAAACGCTCGGTATTGACGTCAAGTTGCAAAATCAGGAATGGAAAACCTA TATCGATAGCCGTAACACCGGCAATTTCGACGTGGTGCGCGCTTCGTGGGTCGGCGATTACAATGAAGCCTCGACCTTCC TGTCGCTGTTAAGCTCAACCCACAGCGGAAATATCGCTAAATTCAAAAGTGCGGATTACGACAAACTGCTCGCGCAGGCC AGCCGAGAAACCAGTCCGGCAGCCTTGACCACTGACTACAACAAACTTGAGCAGATCATCGCCGAACAGGCACCGATTGC GCCAATTTATCAGTATACCAATGGCCGATTGATCAAACCCTGGGTGAAAGGCTACCCGATCACCAATCCGGAAGACGTGG CGTACAGCCAGACGATGTATATTTTGAAGCATTGA
Upstream 100 bases:
>100_bases GGCCCCCAGTTTTTACATCTTGTCCGCCGGGAACTCTAGGTGAGACTAATCTTGTGCTATAAGATAAAAAATTCAGATGG TTAACGGGGGATAAATCAGA
Downstream 100 bases:
>100_bases TATATTGCGATAGTCCCATGTGTTGCCATCAAACCCCGCGAGAGCGGGGTTTCTACTTAGGTGGCAGGACTATGGGGCAT CAAACAATGCGCTACGGCCT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 544; Mature: 543
Protein sequence:
>544_residues MTRKKIQQGFRLALCAVAIGAGLSSAMAAQVPPGTTLAEKQEIVRHIKDEPASLDPIKAVGLPEAQLARDLFEGLVNQDA NGKVIPGVATRWQTTDNQTYIFTLRKDARWSNGDPVTAKDFVYSWQRLVEPKNLSPFAWFAQLAGIQNADEIITGKLPAD KLGVTALDDYTFKVQLNKPVPYFVSLTANFSLFPVNKAVVEKFGNDWTKVGNLVGNGAFKLQERVVNEKLVLTPNDHYWD HAHTVLTKVTFVPINQESNATKRYLAGDIDITESFPKNMYQKLLKDIPNQVYTPDQLGTYYYAFNTQRAPTNDVRVRKAL SYAIDRKIIAEKVLGTGEKPAYHFTPDVTAGFKPEVSLLQQQPQAELDAQAKALMQAAGYGPNNPLKLTLLYNTSESHQK IAIAVASMWKKTLGIDVKLQNQEWKTYIDSRNTGNFDVVRASWVGDYNEASTFLSLLSSTHSGNIAKFKSADYDKLLAQA SRETSPAALTTDYNKLEQIIAEQAPIAPIYQYTNGRLIKPWVKGYPITNPEDVAYSQTMYILKH
Sequences:
>Translated_544_residues MTRKKIQQGFRLALCAVAIGAGLSSAMAAQVPPGTTLAEKQEIVRHIKDEPASLDPIKAVGLPEAQLARDLFEGLVNQDA NGKVIPGVATRWQTTDNQTYIFTLRKDARWSNGDPVTAKDFVYSWQRLVEPKNLSPFAWFAQLAGIQNADEIITGKLPAD KLGVTALDDYTFKVQLNKPVPYFVSLTANFSLFPVNKAVVEKFGNDWTKVGNLVGNGAFKLQERVVNEKLVLTPNDHYWD HAHTVLTKVTFVPINQESNATKRYLAGDIDITESFPKNMYQKLLKDIPNQVYTPDQLGTYYYAFNTQRAPTNDVRVRKAL SYAIDRKIIAEKVLGTGEKPAYHFTPDVTAGFKPEVSLLQQQPQAELDAQAKALMQAAGYGPNNPLKLTLLYNTSESHQK IAIAVASMWKKTLGIDVKLQNQEWKTYIDSRNTGNFDVVRASWVGDYNEASTFLSLLSSTHSGNIAKFKSADYDKLLAQA SRETSPAALTTDYNKLEQIIAEQAPIAPIYQYTNGRLIKPWVKGYPITNPEDVAYSQTMYILKH >Mature_543_residues TRKKIQQGFRLALCAVAIGAGLSSAMAAQVPPGTTLAEKQEIVRHIKDEPASLDPIKAVGLPEAQLARDLFEGLVNQDAN GKVIPGVATRWQTTDNQTYIFTLRKDARWSNGDPVTAKDFVYSWQRLVEPKNLSPFAWFAQLAGIQNADEIITGKLPADK LGVTALDDYTFKVQLNKPVPYFVSLTANFSLFPVNKAVVEKFGNDWTKVGNLVGNGAFKLQERVVNEKLVLTPNDHYWDH AHTVLTKVTFVPINQESNATKRYLAGDIDITESFPKNMYQKLLKDIPNQVYTPDQLGTYYYAFNTQRAPTNDVRVRKALS YAIDRKIIAEKVLGTGEKPAYHFTPDVTAGFKPEVSLLQQQPQAELDAQAKALMQAAGYGPNNPLKLTLLYNTSESHQKI AIAVASMWKKTLGIDVKLQNQEWKTYIDSRNTGNFDVVRASWVGDYNEASTFLSLLSSTHSGNIAKFKSADYDKLLAQAS RETSPAALTTDYNKLEQIIAEQAPIAPIYQYTNGRLIKPWVKGYPITNPEDVAYSQTMYILKH
Specific function: Essential for the uptake of the murein peptide L-alanyl- gamma-D-glutamyl-meso-diaminopimelate. Also transports some alpha- linked peptides such as Pro-Phe-Lys with low affinity. The transport is effected by the oligopeptide permease system [H]
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87081878, Length=530, Percent_Identity=73.5849056603774, Blast_Score=822, Evalue=0.0, Organism=Escherichia coli, GI1787495, Length=541, Percent_Identity=47.8743068391867, Blast_Score=506, Evalue=1e-144, Organism=Escherichia coli, GI1789397, Length=518, Percent_Identity=43.2432432432432, Blast_Score=410, Evalue=1e-116, Organism=Escherichia coli, GI1787762, Length=539, Percent_Identity=24.860853432282, Blast_Score=126, Evalue=4e-30, Organism=Escherichia coli, GI1789887, Length=427, Percent_Identity=25.9953161592506, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI1789966, Length=480, Percent_Identity=23.9583333333333, Blast_Score=109, Evalue=5e-25, Organism=Escherichia coli, GI1787551, Length=537, Percent_Identity=24.0223463687151, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1787052, Length=515, Percent_Identity=21.1650485436893, Blast_Score=77, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 60645; Mature: 60513
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRKKIQQGFRLALCAVAIGAGLSSAMAAQVPPGTTLAEKQEIVRHIKDEPASLDPIKAV CCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC GLPEAQLARDLFEGLVNQDANGKVIPGVATRWQTTDNQTYIFTLRKDARWSNGDPVTAKD CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCHHH FVYSWQRLVEPKNLSPFAWFAQLAGIQNADEIITGKLPADKLGVTALDDYTFKVQLNKPV HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHEECCCCCHHCCCEEECCEEEEEEECCCC PYFVSLTANFSLFPVNKAVVEKFGNDWTKVGNLVGNGAFKLQERVVNEKLVLTPNDHYWD CEEEEEECCCEEEECCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCH HAHTVLTKVTFVPINQESNATKRYLAGDIDITESFPKNMYQKLLKDIPNQVYTPDQLGTY HHHHHHHEEEEEEECCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHCCHHCCCCHHHCCE YYAFNTQRAPTNDVRVRKALSYAIDRKIIAEKVLGTGEKPAYHFTPDVTAGFKPEVSLLQ EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHH QQPQAELDAQAKALMQAAGYGPNNPLKLTLLYNTSESHQKIAIAVASMWKKTLGIDVKLQ CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEC NQEWKTYIDSRNTGNFDVVRASWVGDYNEASTFLSLLSSTHSGNIAKFKSADYDKLLAQA CCHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHH SRETSPAALTTDYNKLEQIIAEQAPIAPIYQYTNGRLIKPWVKGYPITNPEDVAYSQTMY CCCCCCCEEECCHHHHHHHHHHCCCCCCEEEECCCEEECHHHCCCCCCCCCCCCHHEEEE ILKH EEEC >Mature Secondary Structure TRKKIQQGFRLALCAVAIGAGLSSAMAAQVPPGTTLAEKQEIVRHIKDEPASLDPIKAV CHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC GLPEAQLARDLFEGLVNQDANGKVIPGVATRWQTTDNQTYIFTLRKDARWSNGDPVTAKD CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCHHH FVYSWQRLVEPKNLSPFAWFAQLAGIQNADEIITGKLPADKLGVTALDDYTFKVQLNKPV HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHEECCCCCHHCCCEEECCEEEEEEECCCC PYFVSLTANFSLFPVNKAVVEKFGNDWTKVGNLVGNGAFKLQERVVNEKLVLTPNDHYWD CEEEEEECCCEEEECCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCH HAHTVLTKVTFVPINQESNATKRYLAGDIDITESFPKNMYQKLLKDIPNQVYTPDQLGTY HHHHHHHEEEEEEECCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHCCHHCCCCHHHCCE YYAFNTQRAPTNDVRVRKALSYAIDRKIIAEKVLGTGEKPAYHFTPDVTAGFKPEVSLLQ EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHH QQPQAELDAQAKALMQAAGYGPNNPLKLTLLYNTSESHQKIAIAVASMWKKTLGIDVKLQ CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEC NQEWKTYIDSRNTGNFDVVRASWVGDYNEASTFLSLLSSTHSGNIAKFKSADYDKLLAQA CCHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHH SRETSPAALTTDYNKLEQIIAEQAPIAPIYQYTNGRLIKPWVKGYPITNPEDVAYSQTMY CCCCCCCEEECCHHHHHHHHHHCCCCCCEEEECCCEEECHHHCCCCCCCCCCCCHHEEEE ILKH EEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9495761; 9097039; 9278503 [H]