Click here to switch to the map view.

The map label for this gene is ydbJ [H]

Identifier: 157370842

GI number: 157370842

Start: 2863434

End: 2863676

Strand: Reverse

Name: ydbJ [H]

Synonym: Spro_2602

Alternate gene names: 157370842

Gene position: 2863676-2863434 (Counterclockwise)

Preceding gene: 157370843

Following gene: 157370839

Centisome position: 52.56

GC content: 55.14

Gene sequence:

>243_bases
TTGCTGGCCGGTGCCGTATTGCTTTTGGCCGCATGCAGCAGCAAAAATGAAGAGCCAGTACAGCAGGGCAACAGTGCCAG
AATCAATACCTTACAGACCAGCGCGAACTGCGCCAGCGTGGGCGGTACCACTACCGTGACGCACAATTTAAACGGCGAGG
CGGTAAGAATGTGCCAGATGCCGAATGGTAAGCAATGCGAAGAATGGACGCTGGGTCAGGGAGCTTGTTCAACCGCCGGT
TAA

Upstream 100 bases:

>100_bases
CGAAACGTGTCCGCATAAAGTGACGCGAGTTATCGGCAATGGCGATTTTACACAGCTTAGTTCCGGGTTCAGGAGTGGAG
TAATGACAACATCAAAATGG

Downstream 100 bases:

>100_bases
ACCGGAAAGAACACCAGGCCACCAGGGCCTGGTGAGCAGGGATTACTGCACCCAGTCTCGCTGGGTATAGACCAGGACGT
GGCCGCTGCCGCTCAGTGTC

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MLAGAVLLLAACSSKNEEPVQQGNSARINTLQTSANCASVGGTTTVTHNLNGEAVRMCQMPNGKQCEEWTLGQGACSTAG

Sequences:

>Translated_80_residues
MLAGAVLLLAACSSKNEEPVQQGNSARINTLQTSANCASVGGTTTVTHNLNGEAVRMCQMPNGKQCEEWTLGQGACSTAG
>Mature_80_residues
MLAGAVLLLAACSSKNEEPVQQGNSARINTLQTSANCASVGGTTTVTHNLNGEAVRMCQMPNGKQCEEWTLGQGACSTAG

Specific function: Unknown

COG id: COG3042

COG function: function code R; Putative hemolysin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081894, Length=81, Percent_Identity=45.679012345679, Blast_Score=65, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005590 [H]

Pfam domain/function: PF03891 DUF333 [H]

EC number: NA

Molecular weight: Translated: 8183; Mature: 8183

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
6.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
10.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAGAVLLLAACSSKNEEPVQQGNSARINTLQTSANCASVGGTTTVTHNLNGEAVRMCQM
CCCHHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEC
PNGKQCEEWTLGQGACSTAG
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLAGAVLLLAACSSKNEEPVQQGNSARINTLQTSANCASVGGTTTVTHNLNGEAVRMCQM
CCCHHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEC
PNGKQCEEWTLGQGACSTAG
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]