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The map label for this gene is ydcM [C]

Identifier: 157370729

GI number: 157370729

Start: 2731288

End: 2732058

Strand: Reverse

Name: ydcM [C]

Synonym: Spro_2489

Alternate gene names: 157370729

Gene position: 2732058-2731288 (Counterclockwise)

Preceding gene: 157370730

Following gene: 157370727

Centisome position: 50.14

GC content: 51.1

Gene sequence:

>771_bases
ATGCTCAGTTCGGCGCGGTGCGTTTTGCGTACAATAAAGCTCTGTATATCAGCCGCCACAAGTACCAGCGACACGGCGTA
TCGGTCAGTACTCTGTGACGATGGGCTGACCGAGCCAGCCAAACCCACACTGATAACCCGCGTAACCGGTTGTGATTTGG
GTTTGTCACATTACTTAATTCAATCGAACGGCAAAAAAATAGCCAACCCACGACATCTGGTACGTGCCAGCCGTAATCTG
CGGCGTAAACAAAAAGCGCTGTCACGAAAGATAAAAGGCAGTGTAAACCGGGCAAAAGCGCGTTTACAGGTAGCGAAATG
CCACGAGCATGTGGCGAATGCCCGTGCTGACTTCCAGCATAAATTGTCTCGGACACTGGTTGACGAAAACCAAGCGGTCA
TTGTTGAGACACTGAAAGCAGCAAACATGATGAAAAATCACAAGCTGGCGCGGCACATTGCGGATGCGTCGTGGTCTGGG
TTCGTGATGAAACTGGAATACAAAGCGGAGCAGTCCGGCAAACACCTGGTGAAAATTGATCAATGGTTTGCCAGCTCTAA
AACCTGCCATTGCTGCGGTTATAAAATGACGGAAATGCCGCTGAATAAACGTATCTGGCCATGCCCGGCGTGTGGTGTTG
AGCATGACCGCGATATTAACGCGGCCATCAACATCCAGCACAAGGGTATAACGGATTTACAGGCGGCGGGACTCGTCGTT
TCTGCCCATGGAGGCCAGCGTAAATCTGTCATATCGACGGTTGCGGCCTGA

Upstream 100 bases:

>100_bases
TAAGGTCATACAGTACAAGCTGATTATCGGTGAGCGTCCATGATGAAAAGAGCCACTAAAGTACGCCTGTACCCGACTAC
CGAACAGGAGGCATTCTTGA

Downstream 100 bases:

>100_bases
GAAGTGGGAAGCCTCGTCGTTTACGGCGGGGAGCAGTCACTGAGTCACGCACAGCTCATTCCAGTAGCTGAAACGGACGC
GCTGTTTCAGTCGGTTATTC

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLSSARCVLRTIKLCISAATSTSDTAYRSVLCDDGLTEPAKPTLITRVTGCDLGLSHYLIQSNGKKIANPRHLVRASRNL
RRKQKALSRKIKGSVNRAKARLQVAKCHEHVANARADFQHKLSRTLVDENQAVIVETLKAANMMKNHKLARHIADASWSG
FVMKLEYKAEQSGKHLVKIDQWFASSKTCHCCGYKMTEMPLNKRIWPCPACGVEHDRDINAAINIQHKGITDLQAAGLVV
SAHGGQRKSVISTVAA

Sequences:

>Translated_256_residues
MLSSARCVLRTIKLCISAATSTSDTAYRSVLCDDGLTEPAKPTLITRVTGCDLGLSHYLIQSNGKKIANPRHLVRASRNL
RRKQKALSRKIKGSVNRAKARLQVAKCHEHVANARADFQHKLSRTLVDENQAVIVETLKAANMMKNHKLARHIADASWSG
FVMKLEYKAEQSGKHLVKIDQWFASSKTCHCCGYKMTEMPLNKRIWPCPACGVEHDRDINAAINIQHKGITDLQAAGLVV
SAHGGQRKSVISTVAA
>Mature_256_residues
MLSSARCVLRTIKLCISAATSTSDTAYRSVLCDDGLTEPAKPTLITRVTGCDLGLSHYLIQSNGKKIANPRHLVRASRNL
RRKQKALSRKIKGSVNRAKARLQVAKCHEHVANARADFQHKLSRTLVDENQAVIVETLKAANMMKNHKLARHIADASWSG
FVMKLEYKAEQSGKHLVKIDQWFASSKTCHCCGYKMTEMPLNKRIWPCPACGVEHDRDINAAINIQHKGITDLQAAGLVV
SAHGGQRKSVISTVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=232, Percent_Identity=28.448275862069, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 28216; Mature: 28216

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSARCVLRTIKLCISAATSTSDTAYRSVLCDDGLTEPAKPTLITRVTGCDLGLSHYLI
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHH
QSNGKKIANPRHLVRASRNLRRKQKALSRKIKGSVNRAKARLQVAKCHEHVANARADFQH
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KLSRTLVDENQAVIVETLKAANMMKNHKLARHIADASWSGFVMKLEYKAEQSGKHLVKID
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEH
QWFASSKTCHCCGYKMTEMPLNKRIWPCPACGVEHDRDINAAINIQHKGITDLQAAGLVV
HHHCCCCCEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCEEE
SAHGGQRKSVISTVAA
ECCCCCHHHHHHHHCC
>Mature Secondary Structure
MLSSARCVLRTIKLCISAATSTSDTAYRSVLCDDGLTEPAKPTLITRVTGCDLGLSHYLI
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHH
QSNGKKIANPRHLVRASRNLRRKQKALSRKIKGSVNRAKARLQVAKCHEHVANARADFQH
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KLSRTLVDENQAVIVETLKAANMMKNHKLARHIADASWSGFVMKLEYKAEQSGKHLVKID
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEH
QWFASSKTCHCCGYKMTEMPLNKRIWPCPACGVEHDRDINAAINIQHKGITDLQAAGLVV
HHHCCCCCEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCEEE
SAHGGQRKSVISTVAA
ECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]