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The map label for this gene is ydcN [H]

Identifier: 157370727

GI number: 157370727

Start: 2729425

End: 2729994

Strand: Reverse

Name: ydcN [H]

Synonym: Spro_2487

Alternate gene names: 157370727

Gene position: 2729994-2729425 (Counterclockwise)

Preceding gene: 157370729

Following gene: 157370725

Centisome position: 50.1

GC content: 61.58

Gene sequence:

>570_bases
ATGAGCGTTAATACCGACAGTAACCTCACTCCTATTGGCCTGCTTTCTAGCGCTATTCGCCGCGAACGCGAGCGGTTGGG
GCTGTCGGTTACCGAGCTGGCCCGGCGGGCGGGTATAGCAAAATCGACGCTTTCACAGCTGGAAACCGGCAACGGTAACC
CCAGTCTGGAAACGCTGTGGGCGTTGGCGATGGCGCTGGATGTGCCGGTCAGCCGGTTAATCTCCCAGCCGCGTCAGCAC
GTGCAGGTGATCCGCGCCAATGAAGGGGTGACCACCGTTTCCGAGCAGGCCAATTACGCCGCGACCTTGTTGGCGACCTG
TCCGCCGGGCGCACAGCGCGATATTTACCGCCTGAGCGTGCAACCGGGCGAGGCACGTATTTCGCGCCCGCATATGCCGG
GCACCATCGAGCACGTGATTATCAGTAGTGGCAGGGCGCTAGTCGGGCCGAAGGACCAGGCGGTGGAGTTGAGTCCGGGG
GATTACATCAGCTACTCCGCCGATCGGGAGCACATTTTCGAAGCCCTGGCAGCGGATACCACGGCGGTGATGCTGATAGA
GCAAGGCTAG

Upstream 100 bases:

>100_bases
TGCCGACATCGGCAGTTACCATTAAAATGAACAACTGAACATTATGATGAACAGCCTGCAGTCGTTCGTCAAGTCGAACA
AATGGATGATATGGTGAACA

Downstream 100 bases:

>100_bases
TCCCATTGGGTCACTCAGGCAGGGGGGCTGTGTAAAAGGTCATCTTTTGATAATGGTCGTTGAGCAGATTGACCTCCGCC
GTCACGTTGAACCCCAGCGT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSVNTDSNLTPIGLLSSAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLWALAMALDVPVSRLISQPRQH
VQVIRANEGVTTVSEQANYAATLLATCPPGAQRDIYRLSVQPGEARISRPHMPGTIEHVIISSGRALVGPKDQAVELSPG
DYISYSADREHIFEALAADTTAVMLIEQG

Sequences:

>Translated_189_residues
MSVNTDSNLTPIGLLSSAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLWALAMALDVPVSRLISQPRQH
VQVIRANEGVTTVSEQANYAATLLATCPPGAQRDIYRLSVQPGEARISRPHMPGTIEHVIISSGRALVGPKDQAVELSPG
DYISYSADREHIFEALAADTTAVMLIEQG
>Mature_188_residues
SVNTDSNLTPIGLLSSAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLWALAMALDVPVSRLISQPRQHV
QVIRANEGVTTVSEQANYAATLLATCPPGAQRDIYRLSVQPGEARISRPHMPGTIEHVIISSGRALVGPKDQAVELSPGD
YISYSADREHIFEALAADTTAVMLIEQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=162, Percent_Identity=30.2469135802469, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20309; Mature: 20178

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNTDSNLTPIGLLSSAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLW
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHH
ALAMALDVPVSRLISQPRQHVQVIRANEGVTTVSEQANYAATLLATCPPGAQRDIYRLSV
HHHHHHHHHHHHHHHCCHHHHEEHCCCCCCEEHHHCCCCEEEEEEECCCCCCCCEEEEEE
QPGEARISRPHMPGTIEHVIISSGRALVGPKDQAVELSPGDYISYSADREHIFEALAADT
CCCCCCCCCCCCCCHHHHEEEECCCEEECCCCCEEEECCCCEEECCCCHHHHHHHHHCCC
TAVMLIEQG
EEEEEEECC
>Mature Secondary Structure 
SVNTDSNLTPIGLLSSAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLW
CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHH
ALAMALDVPVSRLISQPRQHVQVIRANEGVTTVSEQANYAATLLATCPPGAQRDIYRLSV
HHHHHHHHHHHHHHHCCHHHHEEHCCCCCCEEHHHCCCCEEEEEEECCCCCCCCEEEEEE
QPGEARISRPHMPGTIEHVIISSGRALVGPKDQAVELSPGDYISYSADREHIFEALAADT
CCCCCCCCCCCCCCHHHHEEEECCCEEECCCCCEEEECCCCEEECCCCHHHHHHHHHCCC
TAVMLIEQG
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]