| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is ygcW [H]
Identifier: 157370702
GI number: 157370702
Start: 2696950
End: 2697735
Strand: Reverse
Name: ygcW [H]
Synonym: Spro_2462
Alternate gene names: 157370702
Gene position: 2697735-2696950 (Counterclockwise)
Preceding gene: 157370705
Following gene: 157370701
Centisome position: 49.51
GC content: 51.27
Gene sequence:
>786_bases ATGTCACTAGATGCATTGAATGCGTTCTCACTGGATTTCTTTTCGCTGAAGGGCAAGACGGCCATTGTCACCGGTGGCAA CAGCGGTCTGGGACAGGCGTTTGCCGTTGCCCTGGCCAAGGCCGGTGCCAACCTGTTTATTCCCAGCTTTGCGATGGATC GCGGCCAAACCCGCGAAATCATTGAACAGCAGGGCGTTCGCGTTGAGTTTATGCAGGTGGATATCACCGAAAAAGGGGCA CCGGCAAGGGTCATCGCACAATGTATGGCAGACTTTGGCAGCGTGGATATCCTGGTTAACAACGCAGGGATCTGCAAACT GAACAAGGTGCTGGATTTTGGCCGGGCGGACTGGGATCCGATGATTGACATCAATCTGACCGCTGCTTTTGAAATGAGCT ACGAAGCCGCCAAAGTGATGATCCCCAATCAGCAGGGCAAGATCATTAATATCTGCTCGCTTTTCTCATATCTTGGCGGG CAATGGTCCCCGGCCTATTCCGCGACTAAACATGCATTGGCAGGTTTTACCAAAGCTTATTGCGATGAGCTGGGCCAATA TAATATTCAGGTCAATGGTATTGCGCCTGGGTATTACGCCACCGATATTACCGCCGAGACACGCAGTAATCCGGAAACCA ATCGCCGCGTTCTGGAGCATATTCCAGCCAATCGTTGGGGTGACACTCAGGACTTAATGGGCGCAATGGTATTTCTGGCC AGTAAGGCATCAAATTATGTTAATGGCCACTTGCTGGTGGTCGATGGTGGTTATCTGGTTCGTTAA
Upstream 100 bases:
>100_bases GTTACTAGAGCCGATGAGAAAAGTAACTTCTCTGCCCACCCGCAGAGGAGCTTACTTTTCTCATTTTTTTTGCATTTTTT TCAGGTTAAGGAGTTAGTAC
Downstream 100 bases:
>100_bases ATAAACGGGGAAACCCGTTTTATCTCAGGAAACAAATTTCATATTCTTATTATCAGGAAGGAATAATCATGTCTTTGCCT CGTGAAGCTATTGTCACTCA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MSLDALNAFSLDFFSLKGKTAIVTGGNSGLGQAFAVALAKAGANLFIPSFAMDRGQTREIIEQQGVRVEFMQVDITEKGA PARVIAQCMADFGSVDILVNNAGICKLNKVLDFGRADWDPMIDINLTAAFEMSYEAAKVMIPNQQGKIINICSLFSYLGG QWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITAETRSNPETNRRVLEHIPANRWGDTQDLMGAMVFLA SKASNYVNGHLLVVDGGYLVR
Sequences:
>Translated_261_residues MSLDALNAFSLDFFSLKGKTAIVTGGNSGLGQAFAVALAKAGANLFIPSFAMDRGQTREIIEQQGVRVEFMQVDITEKGA PARVIAQCMADFGSVDILVNNAGICKLNKVLDFGRADWDPMIDINLTAAFEMSYEAAKVMIPNQQGKIINICSLFSYLGG QWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITAETRSNPETNRRVLEHIPANRWGDTQDLMGAMVFLA SKASNYVNGHLLVVDGGYLVR >Mature_260_residues SLDALNAFSLDFFSLKGKTAIVTGGNSGLGQAFAVALAKAGANLFIPSFAMDRGQTREIIEQQGVRVEFMQVDITEKGAP ARVIAQCMADFGSVDILVNNAGICKLNKVLDFGRADWDPMIDINLTAAFEMSYEAAKVMIPNQQGKIINICSLFSYLGGQ WSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITAETRSNPETNRRVLEHIPANRWGDTQDLMGAMVFLAS KASNYVNGHLLVVDGGYLVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=30.6201550387597, Blast_Score=116, Evalue=2e-26, Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=30.1255230125523, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=28.2258064516129, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=29.2, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI66933014, Length=248, Percent_Identity=30.241935483871, Blast_Score=91, Evalue=7e-19, Organism=Homo sapiens, GI10190704, Length=262, Percent_Identity=27.0992366412214, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=30.8080808080808, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=29.7979797979798, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI19923817, Length=250, Percent_Identity=25.6, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI7706318, Length=197, Percent_Identity=27.9187817258883, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=29.6875, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=26.2096774193548, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=29.6511627906977, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI59889578, Length=205, Percent_Identity=29.2682926829268, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI4504505, Length=189, Percent_Identity=29.6296296296296, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=27.9187817258883, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI4503817, Length=213, Percent_Identity=27.6995305164319, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI83715985, Length=257, Percent_Identity=28.4046692607004, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI7657478, Length=242, Percent_Identity=25.6198347107438, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI150247226, Length=207, Percent_Identity=26.5700483091787, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI4557649, Length=207, Percent_Identity=27.0531400966184, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI87082160, Length=261, Percent_Identity=85.4406130268199, Blast_Score=476, Evalue=1e-136, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=43.0830039525692, Blast_Score=202, Evalue=1e-53, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=40.4, Blast_Score=195, Evalue=2e-51, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=33.7349397590361, Blast_Score=145, Evalue=4e-36, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=33.739837398374, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI87082100, Length=250, Percent_Identity=34, Blast_Score=130, Evalue=8e-32, Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=33.2, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=27.3092369477912, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI2367365, Length=252, Percent_Identity=28.1746031746032, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=26.953125, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI2367175, Length=255, Percent_Identity=29.8039215686275, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=26.6666666666667, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=30.6122448979592, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=31.9672131147541, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=32.8125, Blast_Score=114, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=32.6923076923077, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=28.4046692607004, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=31.9391634980989, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=31.0344827586207, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=29.8850574712644, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=29.3650793650794, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=26.3157894736842, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=31.8181818181818, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=27.4193548387097, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17563726, Length=268, Percent_Identity=30.2238805970149, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=28.3524904214559, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17560220, Length=257, Percent_Identity=27.2373540856031, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=30, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=28.0769230769231, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=30.5970149253731, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=27.9693486590038, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=26.3565891472868, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=28.6792452830189, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17538486, Length=257, Percent_Identity=29.1828793774319, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=31.3953488372093, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=27.0916334661355, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=27.4131274131274, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=25.9541984732824, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17568967, Length=190, Percent_Identity=30, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=26.0869565217391, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=29.5336787564767, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=28.2722513089005, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17567345, Length=201, Percent_Identity=25.3731343283582, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=25.130890052356, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17561272, Length=253, Percent_Identity=25.296442687747, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=24.5059288537549, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=29.3814432989691, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=25.9842519685039, Blast_Score=79, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=26.4227642276423, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6320089, Length=200, Percent_Identity=28, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=32.3886639676113, Blast_Score=127, Evalue=5e-30, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=31.7269076305221, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=28.6290322580645, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=29.8804780876494, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=30.9803921568627, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=28.9156626506024, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=27.9527559055118, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=30.5882352941176, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=30.2564102564103, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI161076933, Length=194, Percent_Identity=29.3814432989691, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24584748, Length=194, Percent_Identity=29.3814432989691, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24649181, Length=202, Percent_Identity=26.7326732673267, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=26.2626262626263, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=28.4210526315789, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007238, Length=181, Percent_Identity=30.3867403314917, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24640442, Length=215, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI28574402, Length=202, Percent_Identity=28.2178217821782, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24584744, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI21355631, Length=185, Percent_Identity=27.5675675675676, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24644337, Length=174, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28268; Mature: 28136
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLDALNAFSLDFFSLKGKTAIVTGGNSGLGQAFAVALAKAGANLFIPSFAMDRGQTREI CCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCHHCCCCCHHHH IEQQGVRVEFMQVDITEKGAPARVIAQCMADFGSVDILVNNAGICKLNKVLDFGRADWDP HHHCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCEEHHHHHHCCCCCCCC MIDINLTAAFEMSYEAAKVMIPNQQGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAY EEEEEEEEEEEECCCEEEEEECCCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH CDELGQYNIQVNGIAPGYYATDITAETRSNPETNRRVLEHIPANRWGDTQDLMGAMVFLA HHHHCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH SKASNYVNGHLLVVDGGYLVR HHCCCCCCCEEEEEECCEEEC >Mature Secondary Structure SLDALNAFSLDFFSLKGKTAIVTGGNSGLGQAFAVALAKAGANLFIPSFAMDRGQTREI CCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCHHCCCCCHHHH IEQQGVRVEFMQVDITEKGAPARVIAQCMADFGSVDILVNNAGICKLNKVLDFGRADWDP HHHCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCEEHHHHHHCCCCCCCC MIDINLTAAFEMSYEAAKVMIPNQQGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAY EEEEEEEEEEEECCCEEEEEECCCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH CDELGQYNIQVNGIAPGYYATDITAETRSNPETNRRVLEHIPANRWGDTQDLMGAMVFLA HHHHCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH SKASNYVNGHLLVVDGGYLVR HHCCCCCCCEEEEEECCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 9205837 [H]