Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 157370654

GI number: 157370654

Start: 2639927

End: 2642020

Strand: Reverse

Name: yciR [C]

Synonym: Spro_2414

Alternate gene names: 157370654

Gene position: 2642020-2639927 (Counterclockwise)

Preceding gene: 157370655

Following gene: 157370653

Centisome position: 48.49

GC content: 50.1

Gene sequence:

>2094_bases
ATGAGTGTTTTACCCGAGTGCAATGATGGCAACCATCCTTTTGATATAGCTAATGAAATATTTGATGGTTTGCCGAATCT
CATTGGCGTAGGTAATAGCCTCGGGGGACATTTCAATAAATTGTGGTGTGAGTATTCCGGCCTGTCTTCATATGATAACC
GGAACACCGGCTGGTTGAAGGCCTTGCACCCGGATGACTATGCCCTGGTTGATTCGTTGTGTCAGCAAGCGATGACCACC
GCAACTTCTTTCGTTAAACAAGCCCGCCTGCGCCATTGCAGCGGTGAGTATCATTGGTTTCTGCTGTCGTTTGGTGTAAA
AAAAGCCCCGAATTCCGCGCATAACCATTGGTTTCTCAGCTGTACCGATATCCATCATCAAATGCTGGAAAAACAAATCA
TTGCCGAAAAACTGGCGGCGCAGAAAAATATGCTTGATGCCAGTGTCGACTGTATCAAAGTGATTAATAATGATGGTTCA
TTGCTGCATATGAACAAAGCGGGCAGCATCGCTTTGGGTGTAGATGAGAACCAGCAACAGTTTGGCATGCCCTGGTTGGG
TCTGCTGCAGCCAGAAGTTCGCCAGCGTGGCCAAAAAGCGCTCCGCAAGGTGCTGAGCGGGAAAAATGCCAGATTCGCCG
GCCTTAGCGCCACCCCGGATGGCAGACTGCAGCATTGGGATAATATCCTTAGCCCGGTGTTCGACAAGGACGCCCGGATA
CAAAATATATTGTGCGTTTCGCGCGATGTCAGCTCTCAACGGATAGCGGAAAAACGCTTACTGATCGCCAGTGAATATGA
CGAACTGACCGGTTTGCCCAACCGGCGATTATTCAAGAAAAGATTAAAACAGGAAATGAAACGCTCGCGGGCCAATAATA
AATCGCTTGGGCTGATTTTGCTGGATCTCGATCACTTTAAGTTGGTCAACGACACCCTGGGGCACGATGCCGGCGATCAT
CTGTTGCGTGTATTGGCCCGGCGGCTCAAGGCCGATTTGAACGCTAACTCATTTGTTTCCCGATTGGGTGGCGATGAGTT
TGCGGTAGTGATCAGCGACGTCGAAAACGAACAGGATATCTTCAAAATCGCCAATAACTTTCTGCTGCAGCTTGAAACGC
CAATTACCCATGGCGGTAAAGCACTTCATTGCGGCATGAGCATTGGTGGAGCCCTCTACCCGCAGGATGCCCGTGATGCG
TCAGAATTGATGAAATGTGCCGATACCGCTCTGTACGAGCTTAAGGACGGCGGCCGTGGCGGCGTTTATATGTTTAATCC
GCAGATGATGGATAAGGCCAGGGAACGTGCGACACAGCTTAATCACGCACGTCAAATTGTGCGTAACAACCAGATCCGCC
CCAGCTATCAGCCCAAGGTCAATCTGGCAACCGGTGCCATTGTCGGCTTTGAGGCCCTGCTGCGCTGGTATTGCCCGCAA
AATGGCATCCAGACGCCGGATAGCGTCTGCGAAGCGTTTAACGATTACGAACTGGCAACCAAAATCGGCGAAACCATGCA
GATGAAAGTGTTTGCCGATATCTCGGCCTGGCTTGCTTCTGGTGCCGAAGTTTTGCCAGTGTCGCTGAACGCTTCCCCTA
TCGAATTTTTACGTGATAGCTACGCCGAAACATTCCTTCAGCGCTTGCAGATGTTTAATATCCCTCACCATCTGATTGAG
CTGGAAGTGACCGAACATGCCTTTAATAAGCATGGCTCGAAGTATGTGCTGCGAGCTTTGCAAATGCTCAAGGAAATGGG
GATACGGATTGCGCTTGATGATTTTGGCACCGGGCACTCTTCCTTTACCCACCTGATGAACTACCCACTGGACTGCATAA
AACTGGATCGCGACTTTATCCGCCGTATGAATAACGAGACGGCTATTCTAGGCATTGTGGAAAGCATGGGCATTTTGGGA
CAAAAATTATCCATCGATATCATTGCCGAAGGGATTGAAACCGAGCAGCAGCGGCAAACGCTGTGCAACTCCGGCTATCA
TTTGGGCCAGGGTTTTCTGTTTAGCCAGGCCGTTGAGGCGCCCCGTGCACTCAGTATGTTGTTAAAGAGACCCGCCCCCA
AAATAACCGCTTGA

Upstream 100 bases:

>100_bases
CTCTGGTGTTTTTTATTGCGCAGGCCAGGTTATATAATGATTGCCGCTGGCAAAATATTTTTTGGCATGAATGTCCGGCG
GTTTTCAGAGGAAATGACAA

Downstream 100 bases:

>100_bases
CCTTCCCGTGGTGGGAAGCTTTAAGCTCTCCACCAACAGACACTATAAGGGACAGTTCAATGACTTCCGTTTCTCTCAAA
CCCGACTCCACCCCGGCGAT

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 697; Mature: 696

Protein sequence:

>697_residues
MSVLPECNDGNHPFDIANEIFDGLPNLIGVGNSLGGHFNKLWCEYSGLSSYDNRNTGWLKALHPDDYALVDSLCQQAMTT
ATSFVKQARLRHCSGEYHWFLLSFGVKKAPNSAHNHWFLSCTDIHHQMLEKQIIAEKLAAQKNMLDASVDCIKVINNDGS
LLHMNKAGSIALGVDENQQQFGMPWLGLLQPEVRQRGQKALRKVLSGKNARFAGLSATPDGRLQHWDNILSPVFDKDARI
QNILCVSRDVSSQRIAEKRLLIASEYDELTGLPNRRLFKKRLKQEMKRSRANNKSLGLILLDLDHFKLVNDTLGHDAGDH
LLRVLARRLKADLNANSFVSRLGGDEFAVVISDVENEQDIFKIANNFLLQLETPITHGGKALHCGMSIGGALYPQDARDA
SELMKCADTALYELKDGGRGGVYMFNPQMMDKARERATQLNHARQIVRNNQIRPSYQPKVNLATGAIVGFEALLRWYCPQ
NGIQTPDSVCEAFNDYELATKIGETMQMKVFADISAWLASGAEVLPVSLNASPIEFLRDSYAETFLQRLQMFNIPHHLIE
LEVTEHAFNKHGSKYVLRALQMLKEMGIRIALDDFGTGHSSFTHLMNYPLDCIKLDRDFIRRMNNETAILGIVESMGILG
QKLSIDIIAEGIETEQQRQTLCNSGYHLGQGFLFSQAVEAPRALSMLLKRPAPKITA

Sequences:

>Translated_697_residues
MSVLPECNDGNHPFDIANEIFDGLPNLIGVGNSLGGHFNKLWCEYSGLSSYDNRNTGWLKALHPDDYALVDSLCQQAMTT
ATSFVKQARLRHCSGEYHWFLLSFGVKKAPNSAHNHWFLSCTDIHHQMLEKQIIAEKLAAQKNMLDASVDCIKVINNDGS
LLHMNKAGSIALGVDENQQQFGMPWLGLLQPEVRQRGQKALRKVLSGKNARFAGLSATPDGRLQHWDNILSPVFDKDARI
QNILCVSRDVSSQRIAEKRLLIASEYDELTGLPNRRLFKKRLKQEMKRSRANNKSLGLILLDLDHFKLVNDTLGHDAGDH
LLRVLARRLKADLNANSFVSRLGGDEFAVVISDVENEQDIFKIANNFLLQLETPITHGGKALHCGMSIGGALYPQDARDA
SELMKCADTALYELKDGGRGGVYMFNPQMMDKARERATQLNHARQIVRNNQIRPSYQPKVNLATGAIVGFEALLRWYCPQ
NGIQTPDSVCEAFNDYELATKIGETMQMKVFADISAWLASGAEVLPVSLNASPIEFLRDSYAETFLQRLQMFNIPHHLIE
LEVTEHAFNKHGSKYVLRALQMLKEMGIRIALDDFGTGHSSFTHLMNYPLDCIKLDRDFIRRMNNETAILGIVESMGILG
QKLSIDIIAEGIETEQQRQTLCNSGYHLGQGFLFSQAVEAPRALSMLLKRPAPKITA
>Mature_696_residues
SVLPECNDGNHPFDIANEIFDGLPNLIGVGNSLGGHFNKLWCEYSGLSSYDNRNTGWLKALHPDDYALVDSLCQQAMTTA
TSFVKQARLRHCSGEYHWFLLSFGVKKAPNSAHNHWFLSCTDIHHQMLEKQIIAEKLAAQKNMLDASVDCIKVINNDGSL
LHMNKAGSIALGVDENQQQFGMPWLGLLQPEVRQRGQKALRKVLSGKNARFAGLSATPDGRLQHWDNILSPVFDKDARIQ
NILCVSRDVSSQRIAEKRLLIASEYDELTGLPNRRLFKKRLKQEMKRSRANNKSLGLILLDLDHFKLVNDTLGHDAGDHL
LRVLARRLKADLNANSFVSRLGGDEFAVVISDVENEQDIFKIANNFLLQLETPITHGGKALHCGMSIGGALYPQDARDAS
ELMKCADTALYELKDGGRGGVYMFNPQMMDKARERATQLNHARQIVRNNQIRPSYQPKVNLATGAIVGFEALLRWYCPQN
GIQTPDSVCEAFNDYELATKIGETMQMKVFADISAWLASGAEVLPVSLNASPIEFLRDSYAETFLQRLQMFNIPHHLIEL
EVTEHAFNKHGSKYVLRALQMLKEMGIRIALDDFGTGHSSFTHLMNYPLDCIKLDRDFIRRMNNETAILGIVESMGILGQ
KLSIDIIAEGIETEQQRQTLCNSGYHLGQGFLFSQAVEAPRALSMLLKRPAPKITA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=451, Percent_Identity=31.4855875831486, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI87081921, Length=428, Percent_Identity=27.5700934579439, Blast_Score=184, Evalue=2e-47,
Organism=Escherichia coli, GI226510982, Length=417, Percent_Identity=26.8585131894484, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1788381, Length=636, Percent_Identity=23.7421383647799, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI87081845, Length=264, Percent_Identity=29.5454545454545, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=30.1204819277108, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=30.6122448979592, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1786507, Length=284, Percent_Identity=28.8732394366197, Blast_Score=106, Evalue=7e-24,
Organism=Escherichia coli, GI1790496, Length=266, Percent_Identity=28.1954887218045, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=35.2601156069364, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI87081980, Length=230, Percent_Identity=27.8260869565217, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87082096, Length=424, Percent_Identity=25, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=30.3030303030303, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=36.7088607594937, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787055, Length=443, Percent_Identity=21.8961625282167, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=181, Percent_Identity=32.5966850828729, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=33.7016574585635, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=33.5294117647059, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=29.559748427673, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI87081881, Length=203, Percent_Identity=29.5566502463054, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1788849, Length=262, Percent_Identity=25.9541984732824, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI87081974, Length=147, Percent_Identity=30.6122448979592, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082007, Length=182, Percent_Identity=27.4725274725275, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 78026; Mature: 77895

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLPECNDGNHPFDIANEIFDGLPNLIGVGNSLGGHFNKLWCEYSGLSSYDNRNTGWLK
CCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEE
ALHPDDYALVDSLCQQAMTTATSFVKQARLRHCSGEYHWFLLSFGVKKAPNSAHNHWFLS
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEE
CTDIHHQMLEKQIIAEKLAAQKNMLDASVDCIKVINNDGSLLHMNKAGSIALGVDENQQQ
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCEEEECCCCHHH
FGMPWLGLLQPEVRQRGQKALRKVLSGKNARFAGLSATPDGRLQHWDNILSPVFDKDARI
HCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCHH
QNILCVSRDVSSQRIAEKRLLIASEYDELTGLPNRRLFKKRLKQEMKRSRANNKSLGLIL
HHHEEECCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
LDLDHFKLVNDTLGHDAGDHLLRVLARRLKADLNANSFVSRLGGDEFAVVISDVENEQDI
EECCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCHHHH
FKIANNFLLQLETPITHGGKALHCGMSIGGALYPQDARDASELMKCADTALYELKDGGRG
HHHHHHHEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
GVYMFNPQMMDKARERATQLNHARQIVRNNQIRPSYQPKVNLATGAIVGFEALLRWYCPQ
CEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCC
NGIQTPDSVCEAFNDYELATKIGETMQMKVFADISAWLASGAEVLPVSLNASPIEFLRDS
CCCCCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
YAETFLQRLQMFNIPHHLIELEVTEHAFNKHGSKYVLRALQMLKEMGIRIALDDFGTGHS
HHHHHHHHHHHHCCCHHHEEEEHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHH
SFTHLMNYPLDCIKLDRDFIRRMNNETAILGIVESMGILGQKLSIDIIAEGIETEQQRQT
HHHHHHHCCHHHHHHCHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHCCCCHHHHHHH
LCNSGYHLGQGFLFSQAVEAPRALSMLLKRPAPKITA
HHHCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SVLPECNDGNHPFDIANEIFDGLPNLIGVGNSLGGHFNKLWCEYSGLSSYDNRNTGWLK
CCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEE
ALHPDDYALVDSLCQQAMTTATSFVKQARLRHCSGEYHWFLLSFGVKKAPNSAHNHWFLS
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEE
CTDIHHQMLEKQIIAEKLAAQKNMLDASVDCIKVINNDGSLLHMNKAGSIALGVDENQQQ
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCEEEECCCCHHH
FGMPWLGLLQPEVRQRGQKALRKVLSGKNARFAGLSATPDGRLQHWDNILSPVFDKDARI
HCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCHH
QNILCVSRDVSSQRIAEKRLLIASEYDELTGLPNRRLFKKRLKQEMKRSRANNKSLGLIL
HHHEEECCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
LDLDHFKLVNDTLGHDAGDHLLRVLARRLKADLNANSFVSRLGGDEFAVVISDVENEQDI
EECCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCHHHH
FKIANNFLLQLETPITHGGKALHCGMSIGGALYPQDARDASELMKCADTALYELKDGGRG
HHHHHHHEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
GVYMFNPQMMDKARERATQLNHARQIVRNNQIRPSYQPKVNLATGAIVGFEALLRWYCPQ
CEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCC
NGIQTPDSVCEAFNDYELATKIGETMQMKVFADISAWLASGAEVLPVSLNASPIEFLRDS
CCCCCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
YAETFLQRLQMFNIPHHLIELEVTEHAFNKHGSKYVLRALQMLKEMGIRIALDDFGTGHS
HHHHHHHHHHHHCCCHHHEEEEHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHH
SFTHLMNYPLDCIKLDRDFIRRMNNETAILGIVESMGILGQKLSIDIIAEGIETEQQRQT
HHHHHHHCCHHHHHHCHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHCCCCHHHHHHH
LCNSGYHLGQGFLFSQAVEAPRALSMLLKRPAPKITA
HHHCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]