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The map label for this gene is rhaS [H]

Identifier: 157370577

GI number: 157370577

Start: 2550381

End: 2551250

Strand: Direct

Name: rhaS [H]

Synonym: Spro_2337

Alternate gene names: 157370577

Gene position: 2550381-2551250 (Clockwise)

Preceding gene: 157370570

Following gene: 157370578

Centisome position: 46.81

GC content: 57.47

Gene sequence:

>870_bases
ATGTCCGGCTACAAGGCGTTTGAAACACTGCGGGAACATAAAGCGCGGTTGCACAACAGCGTGCAGCTGGGTTCCGGCGT
GGAACTGGCCGCCTGGTCCAACTGCAATGACCGTATTACCCAGGAAAGCGCCGATCACCATACTCTGAGTCTGTATATTG
CCGACGGTTATGAGTGCTATCAAAAAGTGCCCGGTGGCTGGAAGAACGGCGGCGGGCCGGATCGCTTCTGCATTATGCCG
CGCCAGTATGAATCTACCTGGGACGTGCGCAGCGATTTGTCTTTCGTGCACCTTTACTGCACCGACCAGCATTTGCGTCA
GGTGGCAGAGCAAACCTGGGATCGCAGCCCGGCGGCGATCAATCTCGAACCCTACGCTTTTGGCGAGGATCCGCAGATCA
CACTGCTGTATCGCCAGTTTTTACTCAACTGCGACTGGCATGAGCGCGCCAATCAACTGGCACTCAGCAGCGCCACAACC
CTGCTGATGTCACACCTGATCCAGCGTTACAGCCAATTGCAATGGGCGTTACCGCAGGTCCGCGGCGGTCTGGCTCCGGC
GGTCGCCAAACGGGTGAAAGAGTATATTGAGCAGCATCTCGACCAGCCGTTGTTGCTGGCAGACCTGGCGGCACAGGCAG
GGCTGAGTGAGTTCCATTTTGCCCGGATGTTCAAACATGACACGGGCCTGGCACCACATCAGTTTGTGATGCGCGCGCGG
CTGCAGCAGGCAGAAAAACTGCTGCGCCACAGCCTGCTGCCACTGACGCAAATTGCGCTGAAGTGCGGTTTTAGTTCCTC
CAGCCATTTCAGCAACCGCTTCAAGGCGGCCTATGGATTTTCCCCAACGCAAATGCGTCAGGGGCGTTGA

Upstream 100 bases:

>100_bases
GCATATTCTTGCGCTTTTTTTGGCAAAAGCGCGGGCTGACGGCTGGTGTGGCGCTGCGCCACTCTCTACACTGGGTGGAT
GGGTGAAAAAGGGGACGGCG

Downstream 100 bases:

>100_bases
TAGCCAACAGGAGAGAACATGGAACAGCAGTTCGCAGGACTGGGCGTGTTGTTTATCGCCGGATTTGGGCCGATTACCCA
GCATACGGAACAAAGCAAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MSGYKAFETLREHKARLHNSVQLGSGVELAAWSNCNDRITQESADHHTLSLYIADGYECYQKVPGGWKNGGGPDRFCIMP
RQYESTWDVRSDLSFVHLYCTDQHLRQVAEQTWDRSPAAINLEPYAFGEDPQITLLYRQFLLNCDWHERANQLALSSATT
LLMSHLIQRYSQLQWALPQVRGGLAPAVAKRVKEYIEQHLDQPLLLADLAAQAGLSEFHFARMFKHDTGLAPHQFVMRAR
LQQAEKLLRHSLLPLTQIALKCGFSSSSHFSNRFKAAYGFSPTQMRQGR

Sequences:

>Translated_289_residues
MSGYKAFETLREHKARLHNSVQLGSGVELAAWSNCNDRITQESADHHTLSLYIADGYECYQKVPGGWKNGGGPDRFCIMP
RQYESTWDVRSDLSFVHLYCTDQHLRQVAEQTWDRSPAAINLEPYAFGEDPQITLLYRQFLLNCDWHERANQLALSSATT
LLMSHLIQRYSQLQWALPQVRGGLAPAVAKRVKEYIEQHLDQPLLLADLAAQAGLSEFHFARMFKHDTGLAPHQFVMRAR
LQQAEKLLRHSLLPLTQIALKCGFSSSSHFSNRFKAAYGFSPTQMRQGR
>Mature_288_residues
SGYKAFETLREHKARLHNSVQLGSGVELAAWSNCNDRITQESADHHTLSLYIADGYECYQKVPGGWKNGGGPDRFCIMPR
QYESTWDVRSDLSFVHLYCTDQHLRQVAEQTWDRSPAAINLEPYAFGEDPQITLLYRQFLLNCDWHERANQLALSSATTL
LMSHLIQRYSQLQWALPQVRGGLAPAVAKRVKEYIEQHLDQPLLLADLAAQAGLSEFHFARMFKHDTGLAPHQFVMRARL
QQAEKLLRHSLLPLTQIALKCGFSSSSHFSNRFKAAYGFSPTQMRQGR

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=154, Percent_Identity=34.4155844155844, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790857, Length=93, Percent_Identity=38.7096774193548, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32964; Mature: 32833

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGYKAFETLREHKARLHNSVQLGSGVELAAWSNCNDRITQESADHHTLSLYIADGYECY
CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHCCCCCEEEEEEEECCHHHH
QKVPGGWKNGGGPDRFCIMPRQYESTWDVRSDLSFVHLYCTDQHLRQVAEQTWDRSPAAI
HHCCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCEEEEEECHHHHHHHHHHHHCCCCCEE
NLEPYAFGEDPQITLLYRQFLLNCDWHERANQLALSSATTLLMSHLIQRYSQLQWALPQV
ECCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGGLAPAVAKRVKEYIEQHLDQPLLLADLAAQAGLSEFHFARMFKHDTGLAPHQFVMRAR
HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH
LQQAEKLLRHSLLPLTQIALKCGFSSSSHFSNRFKAAYGFSPTQMRQGR
HHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure 
SGYKAFETLREHKARLHNSVQLGSGVELAAWSNCNDRITQESADHHTLSLYIADGYECY
CHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHCCCCCEEEEEEEECCHHHH
QKVPGGWKNGGGPDRFCIMPRQYESTWDVRSDLSFVHLYCTDQHLRQVAEQTWDRSPAAI
HHCCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCEEEEEECHHHHHHHHHHHHCCCCCEE
NLEPYAFGEDPQITLLYRQFLLNCDWHERANQLALSSATTLLMSHLIQRYSQLQWALPQV
ECCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGGLAPAVAKRVKEYIEQHLDQPLLLADLAAQAGLSEFHFARMFKHDTGLAPHQFVMRAR
HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH
LQQAEKLLRHSLLPLTQIALKCGFSSSSHFSNRFKAAYGFSPTQMRQGR
HHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA