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The map label for this gene is rnfD [H]

Identifier: 157370477

GI number: 157370477

Start: 2436671

End: 2437756

Strand: Reverse

Name: rnfD [H]

Synonym: Spro_2237

Alternate gene names: 157370477

Gene position: 2437756-2436671 (Counterclockwise)

Preceding gene: 157370479

Following gene: 157370476

Centisome position: 44.74

GC content: 60.22

Gene sequence:

>1086_bases
ATGAAGTTCAGGCCGGTACAACCCACAGCCAGCAAAGGCTTGCACATCGCCAGTTCCCCCTTCACCCATAACCAGCAAAG
CACCAGCCGTATCATGCTGTGGGTGATGTTGGCCTGCATTCCCGGGATCGCTGCGCAGGTATGGTTTTTTGGCTATGGCA
CGCTGATCCAGACCGCACTGGCGATGATCGTCGCCCTGCTGGCGGAAGGGATCATCCTTTCTCTGCGCAAATTGCCGGTG
CGCACCCGGCTGGCGGATAACTCGGCCCTGCTGACCGCCCTGTTGCTCGGCATCAGTCTGCCGCCACTGGCCCCCTGGTG
GATGATTGTCATCGGCACCTTCTTCGCCATCGTTATTGCCAAACAGCTGTATGGCGGCCTCGGGCAGAATCCGTTCAATC
CGGCCATGGTCGGTTATGTGGTGTTGCTGATCGCCTTCCCGGTTCAGATGACCAGTTGGTTACCGCCGGATGAACTGCGG
GCTACCGCGCTGTCGTTCCAGGATACCCTGTTGGCTATTTTCAGCGGCCACACGACGCAGGGCGCCACCATCCATGAACT
GCAAATGGGTATTGACGGCATCAGCCAGGCCACCCCGCTCGACGGTTTCAAAACCGGCCTGCGCAGCGGTCATAGCGTTG
AGCAGGTGCTGCAACAGCCGCTGTTCGGTGGCACATTGGCCGGTATCGGCTGGCAATGGGTTAATCTCGGTTTCCTGGCC
GGTGGCCTGTTTATGCTGGGTCGTCGTCTGATCCACTGGCAAATCCCCTTCAGCATGCTGGCGGCCATCGCCCTGTGTTC
CGGTTTGGCCTGGTGGCTTGACCCGGCGCAGCAGGCCTCGCCGCTGATCCACCTGTTCTCCGGTGCCAGCATGCTGGGCG
CATTCTTTATTGCTACCGATCCGGTCAGTGCCTCCACCACGCCGAAAGGCCGCCTGATTTACGGCGCATTGGTGGGCGTG
CTGGTGTGGCTAATTCGCGTTTACGGCGGTTATCCGGACGGCGTAGCCTTTGCGGTGTTGCTGGCCAACATTACTGTCCC
ACTGATCGACCACTACACGCAGCCGCGCGTGTACGGTCACCGCTAA

Upstream 100 bases:

>100_bases
GGGTGATTCAGGTAGAATGCAGCGCTATAATTTTTCCTGCGTCTCCGCTGAGAGGCGCGTTGAACCTGCCGATGTCCGGC
AAAGATAGGTGTAGTTCTCT

Downstream 100 bases:

>100_bases
GGAGCCATGATGCTAAATTCAATGAGAAAGCATGGCACCACGTTGGCGGTGTTTGCCGCTGTGACCACCGGCCTGACTGC
GGTAGTCCACAGCCTGACGC

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKFRPVQPTASKGLHIASSPFTHNQQSTSRIMLWVMLACIPGIAAQVWFFGYGTLIQTALAMIVALLAEGIILSLRKLPV
RTRLADNSALLTALLLGISLPPLAPWWMIVIGTFFAIVIAKQLYGGLGQNPFNPAMVGYVVLLIAFPVQMTSWLPPDELR
ATALSFQDTLLAIFSGHTTQGATIHELQMGIDGISQATPLDGFKTGLRSGHSVEQVLQQPLFGGTLAGIGWQWVNLGFLA
GGLFMLGRRLIHWQIPFSMLAAIALCSGLAWWLDPAQQASPLIHLFSGASMLGAFFIATDPVSASTTPKGRLIYGALVGV
LVWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGHR

Sequences:

>Translated_361_residues
MKFRPVQPTASKGLHIASSPFTHNQQSTSRIMLWVMLACIPGIAAQVWFFGYGTLIQTALAMIVALLAEGIILSLRKLPV
RTRLADNSALLTALLLGISLPPLAPWWMIVIGTFFAIVIAKQLYGGLGQNPFNPAMVGYVVLLIAFPVQMTSWLPPDELR
ATALSFQDTLLAIFSGHTTQGATIHELQMGIDGISQATPLDGFKTGLRSGHSVEQVLQQPLFGGTLAGIGWQWVNLGFLA
GGLFMLGRRLIHWQIPFSMLAAIALCSGLAWWLDPAQQASPLIHLFSGASMLGAFFIATDPVSASTTPKGRLIYGALVGV
LVWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGHR
>Mature_361_residues
MKFRPVQPTASKGLHIASSPFTHNQQSTSRIMLWVMLACIPGIAAQVWFFGYGTLIQTALAMIVALLAEGIILSLRKLPV
RTRLADNSALLTALLLGISLPPLAPWWMIVIGTFFAIVIAKQLYGGLGQNPFNPAMVGYVVLLIAFPVQMTSWLPPDELR
ATALSFQDTLLAIFSGHTTQGATIHELQMGIDGISQATPLDGFKTGLRSGHSVEQVLQQPLFGGTLAGIGWQWVNLGFLA
GGLFMLGRRLIHWQIPFSMLAAIALCSGLAWWLDPAQQASPLIHLFSGASMLGAFFIATDPVSASTTPKGRLIYGALVGV
LVWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGHR

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=348, Percent_Identity=67.816091954023, Blast_Score=488, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 39026; Mature: 39026

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFRPVQPTASKGLHIASSPFTHNQQSTSRIMLWVMLACIPGIAAQVWFFGYGTLIQTAL
CCCCCCCCCHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMIVALLAEGIILSLRKLPVRTRLADNSALLTALLLGISLPPLAPWWMIVIGTFFAIVIA
HHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
KQLYGGLGQNPFNPAMVGYVVLLIAFPVQMTSWLPPDELRATALSFQDTLLAIFSGHTTQ
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
GATIHELQMGIDGISQATPLDGFKTGLRSGHSVEQVLQQPLFGGTLAGIGWQWVNLGFLA
CCCHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCHHHCCCHHHHHHHHHH
GGLFMLGRRLIHWQIPFSMLAAIALCSGLAWWLDPAQQASPLIHLFSGASMLGAFFIATD
HHHHHHHHHHHEEECCHHHHHHHHHHCCHHHHCCCHHHHCHHHHHHCCHHHHHHHHHCCC
PVSASTTPKGRLIYGALVGVLVWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
R
C
>Mature Secondary Structure
MKFRPVQPTASKGLHIASSPFTHNQQSTSRIMLWVMLACIPGIAAQVWFFGYGTLIQTAL
CCCCCCCCCHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMIVALLAEGIILSLRKLPVRTRLADNSALLTALLLGISLPPLAPWWMIVIGTFFAIVIA
HHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
KQLYGGLGQNPFNPAMVGYVVLLIAFPVQMTSWLPPDELRATALSFQDTLLAIFSGHTTQ
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
GATIHELQMGIDGISQATPLDGFKTGLRSGHSVEQVLQQPLFGGTLAGIGWQWVNLGFLA
CCCHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCHHHCCCHHHHHHHHHH
GGLFMLGRRLIHWQIPFSMLAAIALCSGLAWWLDPAQQASPLIHLFSGASMLGAFFIATD
HHHHHHHHHHHEEECCHHHHHHHHHHCCHHHHCCCHHHHCHHHHHHCCHHHHHHHHHCCC
PVSASTTPKGRLIYGALVGVLVWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]