Click here to switch to the map view.

The map label for this gene is rnfE [H]

Identifier: 157370475

GI number: 157370475

Start: 2435337

End: 2436035

Strand: Reverse

Name: rnfE [H]

Synonym: Spro_2235

Alternate gene names: 157370475

Gene position: 2436035-2435337 (Counterclockwise)

Preceding gene: 157370476

Following gene: 157370474

Centisome position: 44.71

GC content: 58.66

Gene sequence:

>699_bases
ATGAGTGAAGCCAAAGATCTGATTGTCCAGGGGCTATGGAAGAACAACTCCGCGCTGGTGCAATTGCTGGGGATGTGCCC
GCTGCTGGCCGTGACCTCTACCGTCACCAACGCCCTCGGGCTGGGGCTGGCGACCACGCTGGTGTTGATACTGACCAACA
CCTCGATATCCGCAGTACGCCGCTGGGTGCCGAATGAAGTCCGTATCCCGATTTACGTAATGATCATCGCTGCGGCGGTG
AGCATTGTGCAAATGCTGATCAACGCCTATGCCTTCGGCCTTTATCAGTCGTTGGGGATCTTTATCCCGCTGATCGTCAC
CAACTGTATCGTGGTTGGCCGCGCCGAAGCGGTAGCCTCTAAAAAACCGGTCGGTCTGTCCGCACTGGACGGCCTGGCGA
TTGGCCTGGGGGCTACCGGCGTGATGGTGACGCTGGGTGCGATGCGTGAGCTGCTGGGTAACGGTACCCTGTTCGACGGT
GCCGATATGCTGCTGGGCAGTTGGGCCAAGGTACTGCGGATTGAGGTGGTTCACTTCGACAGCCCGTTCCTGCTGGCGAT
GCTGCCGCCGGGGGCCTTCATTGGTCTGGGCCTGTTGTTGGCGGTAAAATACCTGATTGACGAAAAAATGAAGGCGCGCA
CGGCCAAGGCATTATTGGCCGAACCGGCGCAGGGACAAGGACAGGCAGAAAAAGCGTAA

Upstream 100 bases:

>100_bases
TCACGCCGCGTGCGGTGGTCAATGCCGTTCGACGCACGGCGTTGTATATGGAAACGCTGCCGCCTAAACTTGATAGCTTA
CCTGCCTGTGGAGCCAGCGA

Downstream 100 bases:

>100_bases
TGAATAAGCAGAAACGGCTGGAAATTCTTACCCGACTACGCGACAACGATCCGCATCCGACCACCGAGCTGGTGTACACC
ACGCCGTTTGAGCTGCTGAT

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSEAKDLIVQGLWKNNSALVQLLGMCPLLAVTSTVTNALGLGLATTLVLILTNTSISAVRRWVPNEVRIPIYVMIIAAAV
SIVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAVASKKPVGLSALDGLAIGLGATGVMVTLGAMRELLGNGTLFDG
ADMLLGSWAKVLRIEVVHFDSPFLLAMLPPGAFIGLGLLLAVKYLIDEKMKARTAKALLAEPAQGQGQAEKA

Sequences:

>Translated_232_residues
MSEAKDLIVQGLWKNNSALVQLLGMCPLLAVTSTVTNALGLGLATTLVLILTNTSISAVRRWVPNEVRIPIYVMIIAAAV
SIVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAVASKKPVGLSALDGLAIGLGATGVMVTLGAMRELLGNGTLFDG
ADMLLGSWAKVLRIEVVHFDSPFLLAMLPPGAFIGLGLLLAVKYLIDEKMKARTAKALLAEPAQGQGQAEKA
>Mature_231_residues
SEAKDLIVQGLWKNNSALVQLLGMCPLLAVTSTVTNALGLGLATTLVLILTNTSISAVRRWVPNEVRIPIYVMIIAAAVS
IVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAVASKKPVGLSALDGLAIGLGATGVMVTLGAMRELLGNGTLFDGA
DMLLGSWAKVLRIEVVHFDSPFLLAMLPPGAFIGLGLLLAVKYLIDEKMKARTAKALLAEPAQGQGQAEKA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=211, Percent_Identity=81.042654028436, Blast_Score=321, Evalue=2e-89,
Organism=Escherichia coli, GI1787914, Length=156, Percent_Identity=35.2564102564103, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24383; Mature: 24251

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAKDLIVQGLWKNNSALVQLLGMCPLLAVTSTVTNALGLGLATTLVLILTNTSISAVR
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RWVPNEVRIPIYVMIIAAAVSIVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAVAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
KKPVGLSALDGLAIGLGATGVMVTLGAMRELLGNGTLFDGADMLLGSWAKVLRIEVVHFD
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHEEEEEEEC
SPFLLAMLPPGAFIGLGLLLAVKYLIDEKMKARTAKALLAEPAQGQGQAEKA
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SEAKDLIVQGLWKNNSALVQLLGMCPLLAVTSTVTNALGLGLATTLVLILTNTSISAVR
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RWVPNEVRIPIYVMIIAAAVSIVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAVAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
KKPVGLSALDGLAIGLGATGVMVTLGAMRELLGNGTLFDGADMLLGSWAKVLRIEVVHFD
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHEEEEEEEC
SPFLLAMLPPGAFIGLGLLLAVKYLIDEKMKARTAKALLAEPAQGQGQAEKA
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA