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The map label for this gene is ycfS [H]

Identifier: 157370425

GI number: 157370425

Start: 2386370

End: 2387383

Strand: Direct

Name: ycfS [H]

Synonym: Spro_2185

Alternate gene names: 157370425

Gene position: 2386370-2387383 (Clockwise)

Preceding gene: 157370424

Following gene: 157370430

Centisome position: 43.8

GC content: 57.2

Gene sequence:

>1014_bases
ATGAAACGTGCGTTGAGTTTAATGGGCATGCTATTTGCCACCGTACTGACTGGCACCCAGGCCGCCAGTGCGAGCGAATA
CCCGCTGCCGCCGCCGGACAGCCGTCTGATTGGCGAGAACACCACCTATACCGTACCGAACGATGGCCGCCCGCTGGAGG
CGATTGCCGCCGATTATAAAATTGGTTTGCTGGGCATGCTTGAGGCCAATCCGGGTACCGACCCCTTCCTGCCCAAGCCT
GGCTCGGTACTAACTATCCCGACACAGATGCTGTTGCCGGATACCAAGCGTGAGGGGATCGTGGTCAACCTGGCCGAACT
GCGTCTGTATTACTACCCGAAAGGCGAAAACAAAGTGATTGTTTATCCGATCGGTATCGGCCAAACGGGGATGCACACGC
CGCTGCAGGTGACCTCTGTCAGCCAAAAAATCCCGAACCCGACCTGGACGCCGACGGCCAATATCCGTAAACGCTACCTG
GAAAAAGGCGTGAAGCTGCCGGGGGTGGTACCGGCCGGGCCTGAAAACCCAATGGGCCTGTTCGCCATGCGTCTGGCCAT
GGGACACGGTGAATACCTGATCCACGGCACCAACGCCAACTTTGGTATCGGCATGCGCGTCAGCTCCGGCTGTATCCGCC
TGCGCCCAACGGATATTGAAGCGTTGTTTAATATGGTTCCGCGCGGCACACGCGTGCAGGTCATCAACGATCCGGTGAAA
ATCTCCGTTGAACCGGACGGTAAGCGCTACGTAGAAGTGCATCAGCCACTGTCGAGAGTTGAGAGTGACGATCCGCAGAC
CATGCCGATCACGTTGTCGAAAACCGAGAAGGCTTTTGTCGGGGATGCGCAGACCGATAAGGCCGTGTTCGACAGCGCGG
TTGTACGCCGCTCTGGCATGCCGGTACTGGTTAACCTGGGGCAGAGTCCATCTGAAGTCAGTTTGGCGCCTGTAGCCTCA
CAGGAAGCGAATAAAGGCCTATTTAAGAGCGCACCCATCAGTTCGGTGAATTAA

Upstream 100 bases:

>100_bases
TGCAGCATTGCTAGTATTAATCAGGTCTTGTCTGATTTACCCGCCGCCAAGTGCCCGTTAGCCTTGTGGCCGAACCGTAA
TAAGCATAATAGGGATGATA

Downstream 100 bases:

>100_bases
ACGCGGTCTTAATGGATAATTCTGAGGGGTTCAGCGTGCTGAGCCCTTTTTTTCGCCTGGCGGCAGGGGGAAGCAGGGGG
GGGATCTACAGATAAAAAAA

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKRALSLMGMLFATVLTGTQAASASEYPLPPPDSRLIGENTTYTVPNDGRPLEAIAADYKIGLLGMLEANPGTDPFLPKP
GSVLTIPTQMLLPDTKREGIVVNLAELRLYYYPKGENKVIVYPIGIGQTGMHTPLQVTSVSQKIPNPTWTPTANIRKRYL
EKGVKLPGVVPAGPENPMGLFAMRLAMGHGEYLIHGTNANFGIGMRVSSGCIRLRPTDIEALFNMVPRGTRVQVINDPVK
ISVEPDGKRYVEVHQPLSRVESDDPQTMPITLSKTEKAFVGDAQTDKAVFDSAVVRRSGMPVLVNLGQSPSEVSLAPVAS
QEANKGLFKSAPISSVN

Sequences:

>Translated_337_residues
MKRALSLMGMLFATVLTGTQAASASEYPLPPPDSRLIGENTTYTVPNDGRPLEAIAADYKIGLLGMLEANPGTDPFLPKP
GSVLTIPTQMLLPDTKREGIVVNLAELRLYYYPKGENKVIVYPIGIGQTGMHTPLQVTSVSQKIPNPTWTPTANIRKRYL
EKGVKLPGVVPAGPENPMGLFAMRLAMGHGEYLIHGTNANFGIGMRVSSGCIRLRPTDIEALFNMVPRGTRVQVINDPVK
ISVEPDGKRYVEVHQPLSRVESDDPQTMPITLSKTEKAFVGDAQTDKAVFDSAVVRRSGMPVLVNLGQSPSEVSLAPVAS
QEANKGLFKSAPISSVN
>Mature_337_residues
MKRALSLMGMLFATVLTGTQAASASEYPLPPPDSRLIGENTTYTVPNDGRPLEAIAADYKIGLLGMLEANPGTDPFLPKP
GSVLTIPTQMLLPDTKREGIVVNLAELRLYYYPKGENKVIVYPIGIGQTGMHTPLQVTSVSQKIPNPTWTPTANIRKRYL
EKGVKLPGVVPAGPENPMGLFAMRLAMGHGEYLIHGTNANFGIGMRVSSGCIRLRPTDIEALFNMVPRGTRVQVINDPVK
ISVEPDGKRYVEVHQPLSRVESDDPQTMPITLSKTEKAFVGDAQTDKAVFDSAVVRRSGMPVLVNLGQSPSEVSLAPVAS
QEANKGLFKSAPISSVN

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=284, Percent_Identity=61.6197183098592, Blast_Score=349, Evalue=1e-97,
Organism=Escherichia coli, GI1787968, Length=322, Percent_Identity=55.5900621118012, Blast_Score=344, Evalue=4e-96,
Organism=Escherichia coli, GI1787040, Length=304, Percent_Identity=54.6052631578947, Blast_Score=320, Evalue=1e-88,
Organism=Escherichia coli, GI1788299, Length=313, Percent_Identity=52.7156549520767, Blast_Score=311, Evalue=4e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 36343; Mature: 36343

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRALSLMGMLFATVLTGTQAASASEYPLPPPDSRLIGENTTYTVPNDGRPLEAIAADYK
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCCCCHHHHHCCCE
IGLLGMLEANPGTDPFLPKPGSVLTIPTQMLLPDTKREGIVVNLAELRLYYYPKGENKVI
EEEEEEEECCCCCCCCCCCCCCEEEECHHHCCCCCCCCCEEEEEEHEEEEEEECCCCEEE
VYPIGIGQTGMHTPLQVTSVSQKIPNPTWTPTANIRKRYLEKGVKLPGVVPAGPENPMGL
EEEECCCCCCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
FAMRLAMGHGEYLIHGTNANFGIGMRVSSGCIRLRPTDIEALFNMVPRGTRVQVINDPVK
HHHHHHHCCCCEEEEECCCCCEEEEEECCCEEEECCCCHHHHHHHCCCCCEEEEECCCEE
ISVEPDGKRYVEVHQPLSRVESDDPQTMPITLSKTEKAFVGDAQTDKAVFDSAVVRRSGM
EEECCCCCEEEEHHHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHHCCC
PVLVNLGQSPSEVSLAPVASQEANKGLFKSAPISSVN
CEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRALSLMGMLFATVLTGTQAASASEYPLPPPDSRLIGENTTYTVPNDGRPLEAIAADYK
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCCCCHHHHHCCCE
IGLLGMLEANPGTDPFLPKPGSVLTIPTQMLLPDTKREGIVVNLAELRLYYYPKGENKVI
EEEEEEEECCCCCCCCCCCCCCEEEECHHHCCCCCCCCCEEEEEEHEEEEEEECCCCEEE
VYPIGIGQTGMHTPLQVTSVSQKIPNPTWTPTANIRKRYLEKGVKLPGVVPAGPENPMGL
EEEECCCCCCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
FAMRLAMGHGEYLIHGTNANFGIGMRVSSGCIRLRPTDIEALFNMVPRGTRVQVINDPVK
HHHHHHHCCCCEEEEECCCCCEEEEEECCCEEEECCCCHHHHHHHCCCCCEEEEECCCEE
ISVEPDGKRYVEVHQPLSRVESDDPQTMPITLSKTEKAFVGDAQTDKAVFDSAVVRRSGM
EEECCCCCEEEEHHHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHHCCC
PVLVNLGQSPSEVSLAPVASQEANKGLFKSAPISSVN
CEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]