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The map label for this gene is cspB [H]

Identifier: 157370303

GI number: 157370303

Start: 2253352

End: 2253564

Strand: Direct

Name: cspB [H]

Synonym: Spro_2061

Alternate gene names: 157370303

Gene position: 2253352-2253564 (Clockwise)

Preceding gene: 157370301

Following gene: 157370305

Centisome position: 41.35

GC content: 45.07

Gene sequence:

>213_bases
ATGTCTACTAAAATGACTGGTTTGGTAAAATGGTTTGATGCAGGTAAAGGTTTTGGCTTTATCTCCCCGGCAGACGGCAG
CAAAGACGTGTTCGTGCACTTCTCCGCTATCCAGAGCAATGATTTCAAAACGCTTGATGAAGGTCAGCGCGTTGAATTCA
CTATCGAAAACGGTCAGAAGGGTCCTTCTGCCGGCAACGTAGTAGTTTTATAA

Upstream 100 bases:

>100_bases
TCTTCTTCCGCGAATTTCCTTCTCTAGTGCCCAAGTAAGTTTCCAATAAAAACAGACCTCAATCGCCTTATGGCGTCTCA
AAAATATAAAGGAAATATCT

Downstream 100 bases:

>100_bases
TTTATAGGTAGTGTTTTATTTCTTACGATAGCGAAGAAGGTGTAAACCGGAGCAGCTAAGAAATAAAAGAATTACCTGAA
TAAACTCCGGGATTACCCGG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSTKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTIENGQKGPSAGNVVVL

Sequences:

>Translated_70_residues
MSTKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTIENGQKGPSAGNVVVL
>Mature_69_residues
STKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTIENGQKGPSAGNVVVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=71, Percent_Identity=42.2535211267606, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=75.7142857142857, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=78.5714285714286, Blast_Score=112, Evalue=5e-27,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=74.2857142857143, Blast_Score=110, Evalue=1e-26,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=72.463768115942, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=73.5294117647059, Blast_Score=105, Evalue=6e-25,
Organism=Escherichia coli, GI1788126, Length=68, Percent_Identity=70.5882352941177, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=55.2238805970149, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=52.2388059701493, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=48.3870967741936, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7541; Mature: 7409

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTIENGQK
CCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCC
GPSAGNVVVL
CCCCCCEEEC
>Mature Secondary Structure 
STKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTIENGQK
CCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCC
GPSAGNVVVL
CCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA