| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is yhjA [H]
Identifier: 157370210
GI number: 157370210
Start: 2151457
End: 2152848
Strand: Direct
Name: yhjA [H]
Synonym: Spro_1968
Alternate gene names: 157370210
Gene position: 2151457-2152848 (Clockwise)
Preceding gene: 157370209
Following gene: 157370211
Centisome position: 39.48
GC content: 53.52
Gene sequence:
>1392_bases ATGAAAAAAGTCACCCGTATTGCGGCGATTTCCATTGCAGCTGTTGCGTTGGTTTATTTCGGTTTGGCCGGCTATGTCTG GCATCTCGATACCCAGCGAATGGAGAATAGCTCGGTACTGCGTTCCGCAGTGCAACAGAATAACCAGGTGCTGGGGTTGC TGAGGGAAAAGGGCTGCGACTACTGCCATACCCCGTCCGCTTCGCTTCCGTTCTATGCCTCTTTCCCCATCGCCAAACAG TTGATGGAATACGATATTCGCCTGGGTTACTCCTCCTTCAACCTGGAGCCTGTGCGCAGCGCCTTGATTAAAGATAGGCC GCAGGCACAAAGCGACCTGAATAAAATTGAGTGGGTAATGCAGCACAAAACCATGCCACCCGCCCGCTATGTGGCTTTGC ACTGGGCTGGGCAGATCAATCCCGATGAACGGGAAATTATTCTCGCCTGGATAGCGCAGCAACGCGCGCGCTATTACGCC AGTGCAGATACTGCACAGCCCCATCGTAATGAGCCGGTTCAACCGATCCCCAAAACATTGCCGGTTGATGGGCAGAAGGT GGCATTGGGGTTTCGGCTTTTTCACGATCCCCGCCTGTCTGGGGATAACACTCTTTCCTGTGCTCACTGTCACTCGTTGA ATACCGGCGGGGTCGACGGAAGAAAAACCTCAGTCGGGGTAGGCGGTGCGGTGGGGCCGATTAACGCGCCAACGGTGTTT AACTCGGTGTTCAATAGCGAACAATTCTGGGATGGCCGTGCGCCGTCGCTACAGGCACAGGCCGGTGGGCCGCCATTAAA CCCGATAGAAATGGCCTCTAAATCCTGGGATGAAATTATCAATAAGCTCGATAAGGATCCGCTGCTGACCCGCGATTTTG CTGCGGTCTATCCACAAGGGCTCAGCGGCGAAAATATTACCGATGCCATCGCCGAATTTGAAAAAACCTTAATCACCCCG AATGCCCCCTTCGATAACTGGCTGCGCGGCGATGAGAATGCCATGACGATGCAGCAAAAACGCGGCTATCAATTATTTAA AGACAACAAATGCGCCACCTGCCATGCAGGGATCATATTAGGCGGCCGCTCTTTTGAGCCTTTGGGGCTGAAGCGTGATT TTAATTTTGGCGAGATCACCACGGTAGATATTGGGCGTATGAACGTCACCAGTGCTGTGCGTGACCGGTTACGTCAGAAG GTGCCTGGCTTGCGCAATGTCGCTCAGACCGCGCCTTATTTTCATCGTGGCGACGTCGCTACGCTGGATCAGGCGGTAAA ACTGATGTTGCGTTATCAGGTGGGTAGCGAACTGCCTCAGCAGGACGTCGATGATATTGTCGCCTTCCTCGAAAGTCTGA GCGGGGTCTATACCCCTTACCGGCCAGAATAA
Upstream 100 bases:
>100_bases TGTGGGAATTATTGATTATCGTCAAGATTATTATTTACCCTCTGTTTAGTCTTGTTTGACGACGATTATTTGGTCGGCAA TGTTTCATAAGGAAAGTGAA
Downstream 100 bases:
>100_bases GGAATAACGCTTTCATTCAATGTCTTCTTATCAGGCCCCGGCAACGGGGCTATTTCAGCCTGATATCCCCGCCCGAACGT CGCGTTTCTGAACTAAAATT
Product: cytochrome-c peroxidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 463; Mature: 463
Protein sequence:
>463_residues MKKVTRIAAISIAAVALVYFGLAGYVWHLDTQRMENSSVLRSAVQQNNQVLGLLREKGCDYCHTPSASLPFYASFPIAKQ LMEYDIRLGYSSFNLEPVRSALIKDRPQAQSDLNKIEWVMQHKTMPPARYVALHWAGQINPDEREIILAWIAQQRARYYA SADTAQPHRNEPVQPIPKTLPVDGQKVALGFRLFHDPRLSGDNTLSCAHCHSLNTGGVDGRKTSVGVGGAVGPINAPTVF NSVFNSEQFWDGRAPSLQAQAGGPPLNPIEMASKSWDEIINKLDKDPLLTRDFAAVYPQGLSGENITDAIAEFEKTLITP NAPFDNWLRGDENAMTMQQKRGYQLFKDNKCATCHAGIILGGRSFEPLGLKRDFNFGEITTVDIGRMNVTSAVRDRLRQK VPGLRNVAQTAPYFHRGDVATLDQAVKLMLRYQVGSELPQQDVDDIVAFLESLSGVYTPYRPE
Sequences:
>Translated_463_residues MKKVTRIAAISIAAVALVYFGLAGYVWHLDTQRMENSSVLRSAVQQNNQVLGLLREKGCDYCHTPSASLPFYASFPIAKQ LMEYDIRLGYSSFNLEPVRSALIKDRPQAQSDLNKIEWVMQHKTMPPARYVALHWAGQINPDEREIILAWIAQQRARYYA SADTAQPHRNEPVQPIPKTLPVDGQKVALGFRLFHDPRLSGDNTLSCAHCHSLNTGGVDGRKTSVGVGGAVGPINAPTVF NSVFNSEQFWDGRAPSLQAQAGGPPLNPIEMASKSWDEIINKLDKDPLLTRDFAAVYPQGLSGENITDAIAEFEKTLITP NAPFDNWLRGDENAMTMQQKRGYQLFKDNKCATCHAGIILGGRSFEPLGLKRDFNFGEITTVDIGRMNVTSAVRDRLRQK VPGLRNVAQTAPYFHRGDVATLDQAVKLMLRYQVGSELPQQDVDDIVAFLESLSGVYTPYRPE >Mature_463_residues MKKVTRIAAISIAAVALVYFGLAGYVWHLDTQRMENSSVLRSAVQQNNQVLGLLREKGCDYCHTPSASLPFYASFPIAKQ LMEYDIRLGYSSFNLEPVRSALIKDRPQAQSDLNKIEWVMQHKTMPPARYVALHWAGQINPDEREIILAWIAQQRARYYA SADTAQPHRNEPVQPIPKTLPVDGQKVALGFRLFHDPRLSGDNTLSCAHCHSLNTGGVDGRKTSVGVGGAVGPINAPTVF NSVFNSEQFWDGRAPSLQAQAGGPPLNPIEMASKSWDEIINKLDKDPLLTRDFAAVYPQGLSGENITDAIAEFEKTLITP NAPFDNWLRGDENAMTMQQKRGYQLFKDNKCATCHAGIILGGRSFEPLGLKRDFNFGEITTVDIGRMNVTSAVRDRLRQK VPGLRNVAQTAPYFHRGDVATLDQAVKLMLRYQVGSELPQQDVDDIVAFLESLSGVYTPYRPE
Specific function: Unknown
COG id: COG1858
COG function: function code P; Cytochrome c peroxidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789935, Length=460, Percent_Identity=77.6086956521739, Blast_Score=766, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR003088 - InterPro: IPR004852 [H]
Pfam domain/function: PF03150 CCP_MauG; PF00034 Cytochrom_C [H]
EC number: =1.11.1.5 [H]
Molecular weight: Translated: 51445; Mature: 51445
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: PS51007 CYTC L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVTRIAAISIAAVALVYFGLAGYVWHLDTQRMENSSVLRSAVQQNNQVLGLLREKGCD CCCHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCCEEHHHHHCCCC YCHTPSASLPFYASFPIAKQLMEYDIRLGYSSFNLEPVRSALIKDRPQAQSDLNKIEWVM CCCCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH QHKTMPPARYVALHWAGQINPDEREIILAWIAQQRARYYASADTAQPHRNEPVQPIPKTL HHCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PVDGQKVALGFRLFHDPRLSGDNTLSCAHCHSLNTGGVDGRKTSVGVGGAVGPINAPTVF CCCCCEEEEEEEEEECCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH NSVFNSEQFWDGRAPSLQAQAGGPPLNPIEMASKSWDEIINKLDKDPLLTRDFAAVYPQG HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC LSGENITDAIAEFEKTLITPNAPFDNWLRGDENAMTMQQKRGYQLFKDNKCATCHAGIIL CCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHCCCCEECCCCCCEEECCEEE GGRSFEPLGLKRDFNFGEITTVDIGRMNVTSAVRDRLRQKVPGLRNVAQTAPYFHRGDVA CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHH TLDQAVKLMLRYQVGSELPQQDVDDIVAFLESLSGVYTPYRPE HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKKVTRIAAISIAAVALVYFGLAGYVWHLDTQRMENSSVLRSAVQQNNQVLGLLREKGCD CCCHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCCEEHHHHHCCCC YCHTPSASLPFYASFPIAKQLMEYDIRLGYSSFNLEPVRSALIKDRPQAQSDLNKIEWVM CCCCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH QHKTMPPARYVALHWAGQINPDEREIILAWIAQQRARYYASADTAQPHRNEPVQPIPKTL HHCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PVDGQKVALGFRLFHDPRLSGDNTLSCAHCHSLNTGGVDGRKTSVGVGGAVGPINAPTVF CCCCCEEEEEEEEEECCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH NSVFNSEQFWDGRAPSLQAQAGGPPLNPIEMASKSWDEIINKLDKDPLLTRDFAAVYPQG HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC LSGENITDAIAEFEKTLITPNAPFDNWLRGDENAMTMQQKRGYQLFKDNKCATCHAGIIL CCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHCCCCEECCCCCCEEECCEEE GGRSFEPLGLKRDFNFGEITTVDIGRMNVTSAVRDRLRQKVPGLRNVAQTAPYFHRGDVA CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHH TLDQAVKLMLRYQVGSELPQQDVDDIVAFLESLSGVYTPYRPE HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]