Click here to switch to the map view.

The map label for this gene is ycbB [H]

Identifier: 157369969

GI number: 157369969

Start: 1898453

End: 1900294

Strand: Direct

Name: ycbB [H]

Synonym: Spro_1726

Alternate gene names: 157369969

Gene position: 1898453-1900294 (Clockwise)

Preceding gene: 157369968

Following gene: 157369970

Centisome position: 34.84

GC content: 54.23

Gene sequence:

>1842_bases
ATGTTGCTTAGAAATGGAAACACTGTGCGGCGTCTGGCGTTAAGTTGCGCAATCGCATGTGGTCTTGCGTCGTCGTTACC
CGTATGGGCAACCGTTCCTGCGTTTCCGGTGGCGTCATCCGGCATGTCAGTTGCGCAAAGCCGTTCGGAACTGCTTGCGG
CATTGCCGAAGGGCATTACACCCTATTATCTTTCGACGCTGGCTCCTTTGTACGCGGCGAACCGGATGCAATTGATGTGG
CAGGATCGCGAAGCGGTTCAGCAATTTCAGCAGCAACTGGCCGAATTGGCGATGTCCGGCGTACAGCCGCAGTTTACCCA
ATGGGTGAAGCTGTTGACCAACCCGGCGATTACCGACGTGGCGCGCGATGTGGTGCTGTCTGATGCGATGCTGGGCTATT
TACAGTTTGTTTCGTCCATCGGTGCCAACGGTAATAATTGGCTGTACAGCAACATTCCCTACAAGCTTGGTCTGCCACCC
AATACGGTGATTAACCAGTGGCAATTGGCGCTGCGTCAGGGCAAGACTCTGGCTTATGTCAATACGCTGGCGCCGCAGCA
TCCGCAATACGCCAAGATGCATCAGGCCCTGCGGGATATGCTGGCCGATGGCCGTCCGTGGCCACAAATGGCCAATGGCC
CAAGCCTGCGTCCGGATCAACTGAGTAGTGATATTCCTGCCTTGCGTGAGATCCTGGCGCGTAACGGCATGCTGACGCCT
TCTACGGCACCGGTGGAAGTGCAGGATCCCCCTGCGGTATTGACCGGTTCGCGTAATGAGCCTGACGACGGCGGCCTGTC
AGTAGATGAAGAAAAAAGTCGTGACAGTCAGAGTGCCGTTGTCAGCCCGGCCGCCGCCCCGGTCAAAGATCTCGTCCCAA
CGCCGCAATCGCCTTTTTCGCAGCAGTCAGAAAGCCCGGTGACCGTTACCGATAATCGCTATACTCCCGACCTGGTGGAG
GGCGTTAAGCGTTTCCAGAAATGGCAGGGTCTGAGTGCTGACGGCGTCATTGGCGTGCGCACTCGCGAGTGGCTTAACGT
AACGCCGCAAATACGAGCCTCGTTGTTGGCGCTGAATATCCAGCGGTTACGCATACTACCCGGCCATGTCGATACCGGTA
TTATGGTTAACATTCCTAACTACTCGTTGACCTACTACCAAAACGGCAATGAAGTGCTTTCCTCTCGGGTGATCGTGGGT
CGACCTAGCCGCAAGACGCCGTTGATGAGCAGCGCATTGAATAATGTGGTGGTGAACCCGCCGTGGAACGTACCTACTAC
GCTGGTGCGTGAAGATATCGTGCCGAAGGCGATGCGTGACGGCAGCTACTTCCAGAAGCATGGCTATACCGTGCTCTCGG
GGTGGAGCAACGATGCCGAGGTGATTAATCCGGCAATGATCGACTGGAGTATGATTTCGCCTCGTAATTTCCCGTATCGG
ATCCGTCAGGCTCCGGGAGCGACCAACTCATTGGGGCGTTTTAAATTCAACATGCCGAGTTCGGACGCTATCTATCTGCA
CGATACGCCCAACCATAATCTGTTCCAGAAGGACATCCGCGCCTTAAGTTCCGGCTGTGTTCGGGTCAACAAGGCTTCGG
ATTTGGCGAATATGCTGCTGCAGGATGCCGGCTGGAACAACACCCGTGTTTCTTCCACCCTGAAACAGGGAAATACCACC
TTCGTAAATATCCGCCAGCATATTCCGGTTAAATTGTATTATTTAACCGCCTGGGTCTCTGATGATGGAAAACCACAATT
CCGCACAGATATTTACAATTATGATGACACGGTGAGATCGGGCGCACAAATTTTGGCTCAGGCCGAAAAATTAATGCAAT
AA

Upstream 100 bases:

>100_bases
TATTCATAGGCAGCAAAGGGCAAAATGGCTTTTCTATTCGTATACTGAAACTAATAAGTTGTCTTGGTTATATTTTTTGT
GAGCATACAGGGGGCAATGG

Downstream 100 bases:

>100_bases
ATGCAGTAATTATAAATAAATAACGGTCAGAATATCGGGCCATGTTGCAGGCACTCATTGCGTGAGTGCCTGCAAACCGC
GGGACATCACGGGTTGACTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 613; Mature: 613

Protein sequence:

>613_residues
MLLRNGNTVRRLALSCAIACGLASSLPVWATVPAFPVASSGMSVAQSRSELLAALPKGITPYYLSTLAPLYAANRMQLMW
QDREAVQQFQQQLAELAMSGVQPQFTQWVKLLTNPAITDVARDVVLSDAMLGYLQFVSSIGANGNNWLYSNIPYKLGLPP
NTVINQWQLALRQGKTLAYVNTLAPQHPQYAKMHQALRDMLADGRPWPQMANGPSLRPDQLSSDIPALREILARNGMLTP
STAPVEVQDPPAVLTGSRNEPDDGGLSVDEEKSRDSQSAVVSPAAAPVKDLVPTPQSPFSQQSESPVTVTDNRYTPDLVE
GVKRFQKWQGLSADGVIGVRTREWLNVTPQIRASLLALNIQRLRILPGHVDTGIMVNIPNYSLTYYQNGNEVLSSRVIVG
RPSRKTPLMSSALNNVVVNPPWNVPTTLVREDIVPKAMRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWSMISPRNFPYR
IRQAPGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNNTRVSSTLKQGNTT
FVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDDTVRSGAQILAQAEKLMQ

Sequences:

>Translated_613_residues
MLLRNGNTVRRLALSCAIACGLASSLPVWATVPAFPVASSGMSVAQSRSELLAALPKGITPYYLSTLAPLYAANRMQLMW
QDREAVQQFQQQLAELAMSGVQPQFTQWVKLLTNPAITDVARDVVLSDAMLGYLQFVSSIGANGNNWLYSNIPYKLGLPP
NTVINQWQLALRQGKTLAYVNTLAPQHPQYAKMHQALRDMLADGRPWPQMANGPSLRPDQLSSDIPALREILARNGMLTP
STAPVEVQDPPAVLTGSRNEPDDGGLSVDEEKSRDSQSAVVSPAAAPVKDLVPTPQSPFSQQSESPVTVTDNRYTPDLVE
GVKRFQKWQGLSADGVIGVRTREWLNVTPQIRASLLALNIQRLRILPGHVDTGIMVNIPNYSLTYYQNGNEVLSSRVIVG
RPSRKTPLMSSALNNVVVNPPWNVPTTLVREDIVPKAMRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWSMISPRNFPYR
IRQAPGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNNTRVSSTLKQGNTT
FVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDDTVRSGAQILAQAEKLMQ
>Mature_613_residues
MLLRNGNTVRRLALSCAIACGLASSLPVWATVPAFPVASSGMSVAQSRSELLAALPKGITPYYLSTLAPLYAANRMQLMW
QDREAVQQFQQQLAELAMSGVQPQFTQWVKLLTNPAITDVARDVVLSDAMLGYLQFVSSIGANGNNWLYSNIPYKLGLPP
NTVINQWQLALRQGKTLAYVNTLAPQHPQYAKMHQALRDMLADGRPWPQMANGPSLRPDQLSSDIPALREILARNGMLTP
STAPVEVQDPPAVLTGSRNEPDDGGLSVDEEKSRDSQSAVVSPAAAPVKDLVPTPQSPFSQQSESPVTVTDNRYTPDLVE
GVKRFQKWQGLSADGVIGVRTREWLNVTPQIRASLLALNIQRLRILPGHVDTGIMVNIPNYSLTYYQNGNEVLSSRVIVG
RPSRKTPLMSSALNNVVVNPPWNVPTTLVREDIVPKAMRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWSMISPRNFPYR
IRQAPGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNNTRVSSTLKQGNTT
FVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDDTVRSGAQILAQAEKLMQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=571, Percent_Identity=58.1436077057793, Blast_Score=676, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 67735; Mature: 67735

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRNGNTVRRLALSCAIACGLASSLPVWATVPAFPVASSGMSVAQSRSELLAALPKGIT
CEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
PYYLSTLAPLYAANRMQLMWQDREAVQQFQQQLAELAMSGVQPQFTQWVKLLTNPAITDV
HHHHHHHHHHHHCCHHHEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
ARDVVLSDAMLGYLQFVSSIGANGNNWLYSNIPYKLGLPPNTVINQWQLALRQGKTLAYV
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCHHHHHHHHHHHHCCCEEEEE
NTLAPQHPQYAKMHQALRDMLADGRPWPQMANGPSLRPDQLSSDIPALREILARNGMLTP
ECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCC
STAPVEVQDPPAVLTGSRNEPDDGGLSVDEEKSRDSQSAVVSPAAAPVKDLVPTPQSPFS
CCCCEEECCCCCEEECCCCCCCCCCCCCCHHHCCCCHHHEECCCCCCHHHHCCCCCCCCC
QQSESPVTVTDNRYTPDLVEGVKRFQKWQGLSADGVIGVRTREWLNVTPQIRASLLALNI
CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCHHHHHHHHHHHH
QRLRILPGHVDTGIMVNIPNYSLTYYQNGNEVLSSRVIVGRPSRKTPLMSSALNNVVVNP
HHHEEECCCCCCCEEEECCCCEEEEEECCHHHHHCCEEEECCCCCCCHHHHHHCCEEECC
PWNVPTTLVREDIVPKAMRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWSMISPRNFPYR
CCCCCHHHHHHHHHHHHHHCCCHHHHCCCEEEECCCCCHHHCCCHHEEEEECCCCCCCEE
IRQAPGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLL
EECCCCCCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHH
QDAGWNNTRVSSTLKQGNTTFVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDDTVRS
HHCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCHHHHCCCCCHHHHH
GAQILAQAEKLMQ
HHHHHHHHHHHCC
>Mature Secondary Structure
MLLRNGNTVRRLALSCAIACGLASSLPVWATVPAFPVASSGMSVAQSRSELLAALPKGIT
CEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
PYYLSTLAPLYAANRMQLMWQDREAVQQFQQQLAELAMSGVQPQFTQWVKLLTNPAITDV
HHHHHHHHHHHHCCHHHEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
ARDVVLSDAMLGYLQFVSSIGANGNNWLYSNIPYKLGLPPNTVINQWQLALRQGKTLAYV
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCHHHHHHHHHHHHCCCEEEEE
NTLAPQHPQYAKMHQALRDMLADGRPWPQMANGPSLRPDQLSSDIPALREILARNGMLTP
ECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCC
STAPVEVQDPPAVLTGSRNEPDDGGLSVDEEKSRDSQSAVVSPAAAPVKDLVPTPQSPFS
CCCCEEECCCCCEEECCCCCCCCCCCCCCHHHCCCCHHHEECCCCCCHHHHCCCCCCCCC
QQSESPVTVTDNRYTPDLVEGVKRFQKWQGLSADGVIGVRTREWLNVTPQIRASLLALNI
CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCHHHHHHHHHHHH
QRLRILPGHVDTGIMVNIPNYSLTYYQNGNEVLSSRVIVGRPSRKTPLMSSALNNVVVNP
HHHEEECCCCCCCEEEECCCCEEEEEECCHHHHHCCEEEECCCCCCCHHHHHHCCEEECC
PWNVPTTLVREDIVPKAMRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWSMISPRNFPYR
CCCCCHHHHHHHHHHHHHHCCCHHHHCCCEEEECCCCCHHHCCCHHEEEEECCCCCCCEE
IRQAPGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLL
EECCCCCCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHH
QDAGWNNTRVSSTLKQGNTTFVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDDTVRS
HHCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCHHHHCCCCCHHHHH
GAQILAQAEKLMQ
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]