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The map label for this gene is ynfE [H]

Identifier: 157369930

GI number: 157369930

Start: 1849224

End: 1851677

Strand: Direct

Name: ynfE [H]

Synonym: Spro_1687

Alternate gene names: 157369930

Gene position: 1849224-1851677 (Clockwise)

Preceding gene: 157369929

Following gene: 157369931

Centisome position: 33.94

GC content: 54.89

Gene sequence:

>2454_bases
ATGTCGGAAAACAAAACAAACCGTCAGGAGTCTGGGGGATTCAGTCGTCGCACGTTGGTAAAATCCAGCGGTATCGTCGG
GCTGGCGCTGGCCGTCGGTGGCATAGCATTGCCATTTAGTCGCCGCGCATTAGCGGTTTCAATTAGCGAAAGTGTGCTGC
AAGCCGCGCAGGACAAAGTGGTCTGGGGTGCCTGTTCGGTTAACTGTGGCAGTCGTTGCCCCTTGCGTTTACACGTGCGG
GACGACGAAGTGTATTGGGTCGAAACCGATAACACCGGTCTGGATGAATACGGCGACCATCAGGTTCGAGCCTGTTTACG
CGGCCGCTCTATTCGTCGCCGTATGAACCATCCTGACCGCTTGAATTATCCCATGAAACGCGTCGGTAAGCGTGGTGAAG
GCAAGTTCAAACGTATCAGTTGGGACGAGGCTTATGACGCCATCGCCAACAATCTGAAGCGTATCGTCGAACAGTACGGC
AACGAAGCGGTATATATCAATTACACCTCGGGTATTGTCGGCGGCAATATCACCCGCTCATCGCCAAATGCCTCGCTGGT
CGCCCGTCTGATGAATTGCTATGGCGGTTACCTTAGCCAATACGGTACTTACAGCACTGCGCAAATCGCCTGCGCCATGC
CTTATACCTATGGCAGCAATCTGGGCAACAGTACTTCGGATATTGAAAACAGCAAATTGGTGGTGATGTTCGGTAACAAC
CCAGCCGAGACGCGAATGAGCGGGGGCGGCATCACCTATTATCTGGAGCAGGCGCGCGAACGTTCCAATGCGCGGATGAT
TGTTATCGACCCACGTTATACCGATACCGCCGCCGGGCGTGAGGATGAATGGATCCCAATTCGCCCAGGCACGGATGCGG
CATTGGTCGCCGGACTGGCACATGTGTTGATCAACGAGAATTTGGTCGACCAGCCGTTTCTGGATCGGTATTGCGTTGGC
TACGACGAAAAAACCTTACCCGCCGGCGCCCCGACAAATGGCCACTACAAGGCTTACATTCTTGGGTTGGGTGACGATGG
CGTCGAGAAAACGCCGCAGTGGGCGGCGAAAATTACCGGTATTCCGGCAGCGCGCATTATCAAACTGGCGCGCGAAATCG
GCAGCGCCAAACCGGCCTATATCTGTCAGGGCTGGGGGCCTCAGCGGCAGGCCAATGGTGAACTGACCTCGCGGGCCATC
GCCATGCTGCCGATCCTGACCGGCAATGTCGGCATTAATGGCGGCAACAGCGGCGCGCGTGAATCGACCTATACCATTAC
CATTGAGCGTATGCCGGTATTGACCAACCCGGTCAAAGCGCAGATCTCCTGCTTTAGCTGGACCGATGCCATTGTACGAG
GCCCGGAGATGACCGCCAGGCGTGATGGGGTGCGTGGCCAGGATAAGCTGAACGTGCCGATCAAGTTCATCTGGAACTAT
GCCGGTAACACCATCACCAATCAGCACTCTGACATCAATAAAACCCACGATATTTTGCAGGACGATTCTCAGTGCGAAAT
GATCGTGGTGATTGAGAACTTTATGACCTCGTCGGCGAAATATGCCGATATTCTGCTGCCGGACCTGATGACCGTTGAAC
AGGAAGATATCATTCCCAATGACTATGCCGGGAACATGGGTTATCTGATCTTTATTCAACCCGCCACCGCCGCCAAATTT
GAACGTAAGGGCATTTATGAAGTGCTGAGTGAAGTGGCGCGCCGTTTAGGGCCAGAAGTACATCAGAAATTCACCGAAGG
GCGTACCCAGGCGCAGTGGCTGCAGCATTTATACGCCAAAATGCAGGCGCGGGATCCGCTGCTGCCGGGTTATGAAGCGT
TGCGCAGCATGGGGATCTACAAGCGTAAAGATCCCAATGGTCATTTCGTGGCTTACAAAAATTTCCGTCAGGATCCCGAA
GCGAACCCATTAAAAACACCGTCCGGCAAGATAGAGATCTATTCCAGCAGGTTGGCCGAGATCGCCAACGACTGGCAACT
GGAGAAAGACGAAACCATAAGCCCGTTACCGGTTTATGCCTCTACCTTTGAAGGTTGGGACGATCCGCTGCGTAACACCT
ACCCGCTGCAAATGTTTGGTTTCCACTACAAGGCCCGCACCCATTCCTCGTACGGCAATATCGATGTTCTGCAGGCGGCT
TGCCGCCAGGAGGTGTGGATCAATCCATTGGATGCTCACTCTCGGGGCATCATCGCCGGCGACCAGGTGCGGGTATTCAA
TGGGCGTGGTGAGGTCCGTGTCGAAGCCAAGGTGACGCCGCGCATCATGCCGGGTGTGGTCGCTATGGGGCAGGGAGCCT
GGCATCAGGCCAATATGAGTGGCGATCGGGTTGACCACGGCGCCTGCATGAATACCCTGACCACCCACCGGCCTTCGCCG
TTGGCCAAGGGGAATCCGCAGCATACCAATCTGATCCAAATCGAAAAGGTATAA

Upstream 100 bases:

>100_bases
TTCAGGCTCATCAACAGACACCGAATCTGTCTCCTCTGTTCGCCGCCTTGAGTGAAGGGCATGACGTTTATCAATACCAG
GGTAAAACGTGGAGTGAGTT

Downstream 100 bases:

>100_bases
GGGGTAGCCAATGACTCAGCAATATGGATTCTTTATCGATTCAAGTCGTTGCACCGGCTGCAAAACCTGCGAACTGGCCT
GCAAAGACTATAAAAACCTG

Product: anaerobic dimethyl sulfoxide reductase subunit A

Products: NA

Alternate protein names: DMSO reductase [H]

Number of amino acids: Translated: 817; Mature: 816

Protein sequence:

>817_residues
MSENKTNRQESGGFSRRTLVKSSGIVGLALAVGGIALPFSRRALAVSISESVLQAAQDKVVWGACSVNCGSRCPLRLHVR
DDEVYWVETDNTGLDEYGDHQVRACLRGRSIRRRMNHPDRLNYPMKRVGKRGEGKFKRISWDEAYDAIANNLKRIVEQYG
NEAVYINYTSGIVGGNITRSSPNASLVARLMNCYGGYLSQYGTYSTAQIACAMPYTYGSNLGNSTSDIENSKLVVMFGNN
PAETRMSGGGITYYLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGLAHVLINENLVDQPFLDRYCVG
YDEKTLPAGAPTNGHYKAYILGLGDDGVEKTPQWAAKITGIPAARIIKLAREIGSAKPAYICQGWGPQRQANGELTSRAI
AMLPILTGNVGINGGNSGARESTYTITIERMPVLTNPVKAQISCFSWTDAIVRGPEMTARRDGVRGQDKLNVPIKFIWNY
AGNTITNQHSDINKTHDILQDDSQCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFIQPATAAKF
ERKGIYEVLSEVARRLGPEVHQKFTEGRTQAQWLQHLYAKMQARDPLLPGYEALRSMGIYKRKDPNGHFVAYKNFRQDPE
ANPLKTPSGKIEIYSSRLAEIANDWQLEKDETISPLPVYASTFEGWDDPLRNTYPLQMFGFHYKARTHSSYGNIDVLQAA
CRQEVWINPLDAHSRGIIAGDQVRVFNGRGEVRVEAKVTPRIMPGVVAMGQGAWHQANMSGDRVDHGACMNTLTTHRPSP
LAKGNPQHTNLIQIEKV

Sequences:

>Translated_817_residues
MSENKTNRQESGGFSRRTLVKSSGIVGLALAVGGIALPFSRRALAVSISESVLQAAQDKVVWGACSVNCGSRCPLRLHVR
DDEVYWVETDNTGLDEYGDHQVRACLRGRSIRRRMNHPDRLNYPMKRVGKRGEGKFKRISWDEAYDAIANNLKRIVEQYG
NEAVYINYTSGIVGGNITRSSPNASLVARLMNCYGGYLSQYGTYSTAQIACAMPYTYGSNLGNSTSDIENSKLVVMFGNN
PAETRMSGGGITYYLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGLAHVLINENLVDQPFLDRYCVG
YDEKTLPAGAPTNGHYKAYILGLGDDGVEKTPQWAAKITGIPAARIIKLAREIGSAKPAYICQGWGPQRQANGELTSRAI
AMLPILTGNVGINGGNSGARESTYTITIERMPVLTNPVKAQISCFSWTDAIVRGPEMTARRDGVRGQDKLNVPIKFIWNY
AGNTITNQHSDINKTHDILQDDSQCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFIQPATAAKF
ERKGIYEVLSEVARRLGPEVHQKFTEGRTQAQWLQHLYAKMQARDPLLPGYEALRSMGIYKRKDPNGHFVAYKNFRQDPE
ANPLKTPSGKIEIYSSRLAEIANDWQLEKDETISPLPVYASTFEGWDDPLRNTYPLQMFGFHYKARTHSSYGNIDVLQAA
CRQEVWINPLDAHSRGIIAGDQVRVFNGRGEVRVEAKVTPRIMPGVVAMGQGAWHQANMSGDRVDHGACMNTLTTHRPSP
LAKGNPQHTNLIQIEKV
>Mature_816_residues
SENKTNRQESGGFSRRTLVKSSGIVGLALAVGGIALPFSRRALAVSISESVLQAAQDKVVWGACSVNCGSRCPLRLHVRD
DEVYWVETDNTGLDEYGDHQVRACLRGRSIRRRMNHPDRLNYPMKRVGKRGEGKFKRISWDEAYDAIANNLKRIVEQYGN
EAVYINYTSGIVGGNITRSSPNASLVARLMNCYGGYLSQYGTYSTAQIACAMPYTYGSNLGNSTSDIENSKLVVMFGNNP
AETRMSGGGITYYLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGLAHVLINENLVDQPFLDRYCVGY
DEKTLPAGAPTNGHYKAYILGLGDDGVEKTPQWAAKITGIPAARIIKLAREIGSAKPAYICQGWGPQRQANGELTSRAIA
MLPILTGNVGINGGNSGARESTYTITIERMPVLTNPVKAQISCFSWTDAIVRGPEMTARRDGVRGQDKLNVPIKFIWNYA
GNTITNQHSDINKTHDILQDDSQCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFIQPATAAKFE
RKGIYEVLSEVARRLGPEVHQKFTEGRTQAQWLQHLYAKMQARDPLLPGYEALRSMGIYKRKDPNGHFVAYKNFRQDPEA
NPLKTPSGKIEIYSSRLAEIANDWQLEKDETISPLPVYASTFEGWDDPLRNTYPLQMFGFHYKARTHSSYGNIDVLQAAC
RQEVWINPLDAHSRGIIAGDQVRVFNGRGEVRVEAKVTPRIMPGVVAMGQGAWHQANMSGDRVDHGACMNTLTTHRPSPL
AKGNPQHTNLIQIEKV

Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787870, Length=805, Percent_Identity=82.6086956521739, Blast_Score=1420, Evalue=0.0,
Organism=Escherichia coli, GI171474008, Length=804, Percent_Identity=69.6517412935323, Blast_Score=1202, Evalue=0.0,
Organism=Escherichia coli, GI87081797, Length=806, Percent_Identity=67.12158808933, Blast_Score=1131, Evalue=0.0,
Organism=Escherichia coli, GI145693196, Length=753, Percent_Identity=30.5444887118194, Blast_Score=288, Evalue=7e-79,
Organism=Escherichia coli, GI87081994, Length=860, Percent_Identity=29.5348837209302, Blast_Score=268, Evalue=7e-73,
Organism=Escherichia coli, GI1787231, Length=759, Percent_Identity=30.6982872200263, Blast_Score=259, Evalue=6e-70,
Organism=Escherichia coli, GI3868721, Length=791, Percent_Identity=24.2730720606827, Blast_Score=138, Evalue=2e-33,
Organism=Escherichia coli, GI3868720, Length=461, Percent_Identity=25.1626898047722, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI3868719, Length=468, Percent_Identity=25.2136752136752, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011888
- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR006963
- InterPro:   IPR006655
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: 1.8.99.- [C]

Molecular weight: Translated: 90628; Mature: 90497

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENKTNRQESGGFSRRTLVKSSGIVGLALAVGGIALPFSRRALAVSISESVLQAAQDKV
CCCCCCCCHHCCCCCHHEEECCCCCEEEEHHHCCEECCCCCCEEEEEHHHHHHHHHHCCE
VWGACSVNCGSRCPLRLHVRDDEVYWVETDNTGLDEYGDHQVRACLRGRSIRRRMNHPDR
EEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
LNYPMKRVGKRGEGKFKRISWDEAYDAIANNLKRIVEQYGNEAVYINYTSGIVGGNITRS
CCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
SPNASLVARLMNCYGGYLSQYGTYSTAQIACAMPYTYGSNLGNSTSDIENSKLVVMFGNN
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC
PAETRMSGGGITYYLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGLA
CHHCEECCCCEEEHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHH
HVLINENLVDQPFLDRYCVGYDEKTLPAGAPTNGHYKAYILGLGDDGVEKTPQWAAKITG
HHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHCCC
IPAARIIKLAREIGSAKPAYICQGWGPQRQANGELTSRAIAMLPILTGNVGINGGNSGAR
CCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHEEEEEEEECCEECCCCCCCCC
ESTYTITIERMPVLTNPVKAQISCFSWTDAIVRGPEMTARRDGVRGQDKLNVPIKFIWNY
CCEEEEEEECCCCCCCCCCCEEEEEEHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEC
AGNTITNQHSDINKTHDILQDDSQCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPN
CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEHHHCCCCCHHHHHHHHHHHCCHHCCCCC
DYAGNMGYLIFIQPATAAKFERKGIYEVLSEVARRLGPEVHQKFTEGRTQAQWLQHLYAK
CCCCCCEEEEEEECCCHHHHHHCCHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHH
MQARDPLLPGYEALRSMGIYKRKDPNGHFVAYKNFRQDPEANPLKTPSGKIEIYSSRLAE
HHHCCCCCCCHHHHHHCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHH
IANDWQLEKDETISPLPVYASTFEGWDDPLRNTYPLQMFGFHYKARTHSSYGNIDVLQAA
HHHCCCCCCCCCCCCCCCHHHHCCCCCCHHCCCCCEEEEEEEEEEECCCCCCCHHHHHHH
CRQEVWINPLDAHSRGIIAGDQVRVFNGRGEVRVEAKVTPRIMPGVVAMGQGAWHQANMS
HHHHHCCCCCCCCCCCEEECCEEEEECCCCCEEEEEEECCCCCCCCEEECCCCCEECCCC
GDRVDHGACMNTLTTHRPSPLAKGNPQHTNLIQIEKV
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
SENKTNRQESGGFSRRTLVKSSGIVGLALAVGGIALPFSRRALAVSISESVLQAAQDKV
CCCCCCCHHCCCCCHHEEECCCCCEEEEHHHCCEECCCCCCEEEEEHHHHHHHHHHCCE
VWGACSVNCGSRCPLRLHVRDDEVYWVETDNTGLDEYGDHQVRACLRGRSIRRRMNHPDR
EEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
LNYPMKRVGKRGEGKFKRISWDEAYDAIANNLKRIVEQYGNEAVYINYTSGIVGGNITRS
CCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
SPNASLVARLMNCYGGYLSQYGTYSTAQIACAMPYTYGSNLGNSTSDIENSKLVVMFGNN
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC
PAETRMSGGGITYYLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGLA
CHHCEECCCCEEEHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHH
HVLINENLVDQPFLDRYCVGYDEKTLPAGAPTNGHYKAYILGLGDDGVEKTPQWAAKITG
HHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHCCC
IPAARIIKLAREIGSAKPAYICQGWGPQRQANGELTSRAIAMLPILTGNVGINGGNSGAR
CCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHEEEEEEEECCEECCCCCCCCC
ESTYTITIERMPVLTNPVKAQISCFSWTDAIVRGPEMTARRDGVRGQDKLNVPIKFIWNY
CCEEEEEEECCCCCCCCCCCEEEEEEHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEC
AGNTITNQHSDINKTHDILQDDSQCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPN
CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEHHHCCCCCHHHHHHHHHHHCCHHCCCCC
DYAGNMGYLIFIQPATAAKFERKGIYEVLSEVARRLGPEVHQKFTEGRTQAQWLQHLYAK
CCCCCCEEEEEEECCCHHHHHHCCHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHH
MQARDPLLPGYEALRSMGIYKRKDPNGHFVAYKNFRQDPEANPLKTPSGKIEIYSSRLAE
HHHCCCCCCCHHHHHHCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHH
IANDWQLEKDETISPLPVYASTFEGWDDPLRNTYPLQMFGFHYKARTHSSYGNIDVLQAA
HHHCCCCCCCCCCCCCCCHHHHCCCCCCHHCCCCCEEEEEEEEEEECCCCCCCHHHHHHH
CRQEVWINPLDAHSRGIIAGDQVRVFNGRGEVRVEAKVTPRIMPGVVAMGQGAWHQANMS
HHHHHCCCCCCCCCCCEEECCEEEEECCCCCEEEEEEECCCCCCCCEEECCCCCEECCCC
GDRVDHGACMNTLTTHRPSPLAKGNPQHTNLIQIEKV
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: May Bind 4Fe-4S Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]