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The map label for this gene is ybfI [H]

Identifier: 157369628

GI number: 157369628

Start: 1513609

End: 1514427

Strand: Reverse

Name: ybfI [H]

Synonym: Spro_1385

Alternate gene names: 157369628

Gene position: 1514427-1513609 (Counterclockwise)

Preceding gene: 157369629

Following gene: 157369625

Centisome position: 27.79

GC content: 56.9

Gene sequence:

>819_bases
ATGACCGCTACCGCGCCGCAATTCTGGCGTGATCCGCAGCTCCCTTTTGTGGAAGCTCGCGCCATTGAAGATGGCCGCAA
AGTTTGTTACGCCCTGCATAGCCATGAAATTTTCTCCATCGGTGCTATCACCGGCGGTACCAGCATTTATATTAACGGCC
ACCAACAGCGGCAGGTCAGTACCGGCGACGTGGTAATCATTAACCCGCAGCAGGCCCACGCTTGCAACCCCATCGGCGAC
CAGCGCTGGTCATATATCATGTTTTATATTGATGCCACCTGGCTGGGTAAACTGCAGCAGGAGATCGCCGGTGGCGACGG
TGGTTTTATCCCATTTGATCAGGTCATCAGCCGTGCCCCTGCCCTGTTCAATGGCCTGAACCGGCTTTATTCCCTTTTGA
TCGACCCGCAGCACTGCCAGTTGGAAAAACAAATCGCCCTGGTGGAATACTTCACCGAGCTACAAATCTGTCAGGGCGAT
GTTCGCCTGCCTGCCGCCGAAGCCGAGCATCCGAGACTCAAGGCGGCGGCGACCTTTATCAGCCAACATTGCACTCAACC
ACTGACGCTGGAAGCCATCTGCCAGGCGGCAGCACTCTCACCCTCCTATTTGATTCGCGCCTTTAAGCGACGTTACGGCA
TGACGCCGCACGCCTACCTGGTCAATCAGCGCATTCAGTTCGGCCATCGTCTGCTGAAACGAGGCTATCCGATCGCCGCG
GCTGCCAGCGAAAGCGGCTTTGCCGATCAGGCGCACTTTCAACGCACCTTCAAACTGCTACTGGCTGCCACCCCCGGCCA
GTACCAAAACCCGCGCTAA

Upstream 100 bases:

>100_bases
TGAAGACAGCCAAACACATTAAAAATCATCATCCGCATTCCCTCCCACGCTCATTTTACGCTATAACAAGCTAGCCCTGT
CGTCTCTGAAAGGAAAGCTC

Downstream 100 bases:

>100_bases
ACGCCGTCGGCCAGCAGATAGCAGGCACTGGCCGCCAACAGCAACGCCATCAAACGATTAAAACGCTGCACATTGCGAGC
CTGTTGCAATACCCCGCTCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTATAPQFWRDPQLPFVEARAIEDGRKVCYALHSHEIFSIGAITGGTSIYINGHQQRQVSTGDVVIINPQQAHACNPIGD
QRWSYIMFYIDATWLGKLQQEIAGGDGGFIPFDQVISRAPALFNGLNRLYSLLIDPQHCQLEKQIALVEYFTELQICQGD
VRLPAAEAEHPRLKAAATFISQHCTQPLTLEAICQAAALSPSYLIRAFKRRYGMTPHAYLVNQRIQFGHRLLKRGYPIAA
AASESGFADQAHFQRTFKLLLAATPGQYQNPR

Sequences:

>Translated_272_residues
MTATAPQFWRDPQLPFVEARAIEDGRKVCYALHSHEIFSIGAITGGTSIYINGHQQRQVSTGDVVIINPQQAHACNPIGD
QRWSYIMFYIDATWLGKLQQEIAGGDGGFIPFDQVISRAPALFNGLNRLYSLLIDPQHCQLEKQIALVEYFTELQICQGD
VRLPAAEAEHPRLKAAATFISQHCTQPLTLEAICQAAALSPSYLIRAFKRRYGMTPHAYLVNQRIQFGHRLLKRGYPIAA
AASESGFADQAHFQRTFKLLLAATPGQYQNPR
>Mature_271_residues
TATAPQFWRDPQLPFVEARAIEDGRKVCYALHSHEIFSIGAITGGTSIYINGHQQRQVSTGDVVIINPQQAHACNPIGDQ
RWSYIMFYIDATWLGKLQQEIAGGDGGFIPFDQVISRAPALFNGLNRLYSLLIDPQHCQLEKQIALVEYFTELQICQGDV
RLPAAEAEHPRLKAAATFISQHCTQPLTLEAICQAAALSPSYLIRAFKRRYGMTPHAYLVNQRIQFGHRLLKRGYPIAAA
ASESGFADQAHFQRTFKLLLAATPGQYQNPR

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30382; Mature: 30251

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATAPQFWRDPQLPFVEARAIEDGRKVCYALHSHEIFSIGAITGGTSIYINGHQQRQVS
CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECCCCCCEEC
TGDVVIINPQQAHACNPIGDQRWSYIMFYIDATWLGKLQQEIAGGDGGFIPFDQVISRAP
CCCEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHCH
ALFNGLNRLYSLLIDPQHCQLEKQIALVEYFTELQICQGDVRLPAAEAEHPRLKAAATFI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
SQHCTQPLTLEAICQAAALSPSYLIRAFKRRYGMTPHAYLVNQRIQFGHRLLKRGYPIAA
HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEE
AASESGFADQAHFQRTFKLLLAATPGQYQNPR
ECCCCCCCHHHHHHHHHHHHHEECCCCCCCCC
>Mature Secondary Structure 
TATAPQFWRDPQLPFVEARAIEDGRKVCYALHSHEIFSIGAITGGTSIYINGHQQRQVS
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECCCCCCEEC
TGDVVIINPQQAHACNPIGDQRWSYIMFYIDATWLGKLQQEIAGGDGGFIPFDQVISRAP
CCCEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHCH
ALFNGLNRLYSLLIDPQHCQLEKQIALVEYFTELQICQGDVRLPAAEAEHPRLKAAATFI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
SQHCTQPLTLEAICQAAALSPSYLIRAFKRRYGMTPHAYLVNQRIQFGHRLLKRGYPIAA
HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEE
AASESGFADQAHFQRTFKLLLAATPGQYQNPR
ECCCCCCCHHHHHHHHHHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]