Click here to switch to the map view.

The map label for this gene is yohD [H]

Identifier: 157369593

GI number: 157369593

Start: 1480964

End: 1481527

Strand: Reverse

Name: yohD [H]

Synonym: Spro_1350

Alternate gene names: 157369593

Gene position: 1481527-1480964 (Counterclockwise)

Preceding gene: 157369597

Following gene: 157369591

Centisome position: 27.19

GC content: 57.8

Gene sequence:

>564_bases
ATGGCGGATTTGGCCCACTACATTACGGATTACGGCTACTGGGCGCTGTTTATCGGCTGCCTGGCCGAAGGCGAAACCAT
CACTCTGCTGGGGGGGATTGCCGCGCACCAGGGGTTACTGCATCTGCCCTGGGTGATTGCGGTGGTGGCATTGGGGGGCA
CATTAGGGGATCAGATCCTGTATTTCCTCGGTCGGCGCTTCGGCGGAAAGGTGATTTCACGCATGAAGAGCCAGGAAAAG
CGCATTGAACGCGCCAGGAAGCTGATTGCCCGCCACCCGATGCTGTTCGTGATTGGCGTGCGGTTTATGTATGGTTTTCG
CATCATTGGCCCGGTGTTAATCGGTGCCAGCAAGCTGCCGCCGTCGCGCTTTGTCCCATTGAATATTCTGGGCGCCATCC
TGTGGGCAACGATCTTTGTGTTGCTGGGTTATTTCGGCGGTGAAGCGATCGCCAGGTTTATCTCGGGCTTCGACAAACGG
CTGACCAGCGTGCTGTTCTGCGCACTGGTGATCGCCGTTATCTTGCTGCTGCGATTTTGGTGGCGCCGCCGCCATGCAGA
CTAG

Upstream 100 bases:

>100_bases
TACATCTGTTGCTCCTCTACGGCTGCGTCGCGCCGACAGGGCGCGGCTGACTGACAGAGAGTATACTGACCCTTATGTAT
TAAAGACATAGGGGATCGGG

Downstream 100 bases:

>100_bases
GATTATCGGTTTAGGCCGTGGGATTATTCCGCTTGCGGCCTGTCCCGCATTAACGCCACCAGTTCATGGGCGGCCTTCTC
CAGCGGCCTGTTTTTCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MADLAHYITDYGYWALFIGCLAEGETITLLGGIAAHQGLLHLPWVIAVVALGGTLGDQILYFLGRRFGGKVISRMKSQEK
RIERARKLIARHPMLFVIGVRFMYGFRIIGPVLIGASKLPPSRFVPLNILGAILWATIFVLLGYFGGEAIARFISGFDKR
LTSVLFCALVIAVILLLRFWWRRRHAD

Sequences:

>Translated_187_residues
MADLAHYITDYGYWALFIGCLAEGETITLLGGIAAHQGLLHLPWVIAVVALGGTLGDQILYFLGRRFGGKVISRMKSQEK
RIERARKLIARHPMLFVIGVRFMYGFRIIGPVLIGASKLPPSRFVPLNILGAILWATIFVLLGYFGGEAIARFISGFDKR
LTSVLFCALVIAVILLLRFWWRRRHAD
>Mature_186_residues
ADLAHYITDYGYWALFIGCLAEGETITLLGGIAAHQGLLHLPWVIAVVALGGTLGDQILYFLGRRFGGKVISRMKSQEKR
IERARKLIARHPMLFVIGVRFMYGFRIIGPVLIGASKLPPSRFVPLNILGAILWATIFVLLGYFGGEAIARFISGFDKRL
TSVLFCALVIAVILLLRFWWRRRHAD

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=159, Percent_Identity=63.5220125786163, Blast_Score=207, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 20944; Mature: 20812

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLAHYITDYGYWALFIGCLAEGETITLLGGIAAHQGLLHLPWVIAVVALGGTLGDQIL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHCCHHHHHHH
YFLGRRFGGKVISRMKSQEKRIERARKLIARHPMLFVIGVRFMYGFRIIGPVLIGASKLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PSRFVPLNILGAILWATIFVLLGYFGGEAIARFISGFDKRLTSVLFCALVIAVILLLRFW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRRRHAD
HHHHCCC
>Mature Secondary Structure 
ADLAHYITDYGYWALFIGCLAEGETITLLGGIAAHQGLLHLPWVIAVVALGGTLGDQIL
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHCCHHHHHHH
YFLGRRFGGKVISRMKSQEKRIERARKLIARHPMLFVIGVRFMYGFRIIGPVLIGASKLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PSRFVPLNILGAILWATIFVLLGYFGGEAIARFISGFDKRLTSVLFCALVIAVILLLRFW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRRRHAD
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]