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The map label for this gene is cydA [H]

Identifier: 157369514

GI number: 157369514

Start: 1399442

End: 1401010

Strand: Direct

Name: cydA [H]

Synonym: Spro_1271

Alternate gene names: 157369514

Gene position: 1399442-1401010 (Clockwise)

Preceding gene: 157369513

Following gene: 157369515

Centisome position: 25.68

GC content: 55.13

Gene sequence:

>1569_bases
ATGTTTGATATTGTCGAACTGTCGCGCTTACAGTTTGCTTTAACGGCGATGTACCACTTCTTATTTGTCCCATTAACGCT
GGGTATGGCGTTCTTGCTGGCAATTATGGAAACGGTATATGTACTGTCAGGCAAGCAAATCTATAAAGATATGACCAAAT
TCTGGGGCAAGTTATTTGCAATTAACTTTGCCCTGGGTGTGGCCACCGGTTTGACCATGGAGTTCCAGTTCGGGACTAAC
TGGTCATATTTCTCCCACTACGTCGGTGATATTTTCGGGGCCCCGCTGGCCATCGAAGGTCTGATGGCGTTCTTCCTTGA
ATCGACGCTGGTCGGCCTGTTCTTCTTCGGCTGGGATCGTCTGGGCAAGGTGCAGCACATGGCCGTTACCTGGCTGGTGG
CACTGGGCTCAAACTTCTCTGCGCTGTGGATCCTGGTCGCCAACGGTTGGATGCAAAACCCGATCGCCTCGGATTTCAAC
TTCGAAACCATGCGTATGGAGATGCTCAGCTTCTCCGAACTGGTGCTCAACCCGGTTGCGCAGGTGAAGTTCGTGCATAC
CGTGGCCGCCGGCTACACCTGTGGCGCGATGTTCGTTCTGGGTATCAGCTCTTACTATCTGTTGAAAGGCCGTGACCTCG
CCTTTGCCAAACGCTCCTTCGCTATTGCTGCCAGCTTCGGTATGGCTGCCGTGCTGTCCGTTATCGTTCTGGGTGATGAA
TCCGGCTACGAAATGGGCGACGTGCAGAAAACCAAACTGGCCGCCATCGAAGCCGAGTGGGACACGCAACCGGCACCGGC
TTCCTTTACCCTGTTCGGTATTCCGAATCAGGATAAAATGGAAAACTCCTACTCGATCCAAATCCCTTACGCGCTTGGCC
TTATTGCTACCCGCTCAACAGATACCCAGGTCACCGGCCTGAAAGATCTGATGGCGCAGCATGAAGTGCGTATCCGCAAC
GGGATGAAAGCCTATGGGCTGCTGGAAGAGCTGCGCGGCGGCAATACTGACCCGGCGGTACGCACCGAGTTCAATAAAGC
CAAGCAGGACCTGGGCTACGGCTTACTGCTGAAGCGTTATACCCAGAACGTCACCGACGCGACGGAAACGCAGATCCAAC
AGGCAACCAAAGACTCGATCCCACGCGTAGCACCGCTGTACTTCGCCTTCCGTATCATGGTGGCCTGTGGCGTGCTGATG
CTGTTGATCATCGGTCTGTCGTTCTGGAGCGTGATCCGCAACCGTGTCGGCCAGAGAAAATGGCTGCACCGTGCGGCGCT
GTATGGCCTGCCGCTGCCGTGGATCGCGATCGAAGCCGGCTGGTTTGTGGCTGAATACGGTCGTCAGCCTTGGGCGATTG
GTGAGGTGCTGCCGACTGCGGTCGCCAACTCTTCACTGACTGCAGGCGACATTCTGTTCTCGATGGGGCTGATTTGCGGC
TTGTACACCCTGTTCCTGGTGGCTGAAATGTACCTGATGTTCAAATTTGCACGTCTGGGTCCAAGCAGCCTGAAAACTGG
CCGCTACCACTTTGAACAACCGACTGCCGCCGTGCAGGAAGCGCGCTAA

Upstream 100 bases:

>100_bases
TGTTTAAGGGCATTCACTGCGGGGCGTTACCGGTAGCTTCACCCGAAGTCATATCGATAACCGCATGTCGGAGTCTTCCT
GCGAGGAGCAAGGAGTCAAG

Downstream 100 bases:

>100_bases
ACAGGAGTCCACGTATGTTTGATTATGAAGTACTGCGATTTATCTGGTGGGTCCTGATTGGCGTACTGCTGATCGGTTTC
GCCGTCACCGACGGTTTCGA

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFAINFALGVATGLTMEFQFGTN
WSYFSHYVGDIFGAPLAIEGLMAFFLESTLVGLFFFGWDRLGKVQHMAVTWLVALGSNFSALWILVANGWMQNPIASDFN
FETMRMEMLSFSELVLNPVAQVKFVHTVAAGYTCGAMFVLGISSYYLLKGRDLAFAKRSFAIAASFGMAAVLSVIVLGDE
SGYEMGDVQKTKLAAIEAEWDTQPAPASFTLFGIPNQDKMENSYSIQIPYALGLIATRSTDTQVTGLKDLMAQHEVRIRN
GMKAYGLLEELRGGNTDPAVRTEFNKAKQDLGYGLLLKRYTQNVTDATETQIQQATKDSIPRVAPLYFAFRIMVACGVLM
LLIIGLSFWSVIRNRVGQRKWLHRAALYGLPLPWIAIEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDILFSMGLICG
LYTLFLVAEMYLMFKFARLGPSSLKTGRYHFEQPTAAVQEAR

Sequences:

>Translated_522_residues
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFAINFALGVATGLTMEFQFGTN
WSYFSHYVGDIFGAPLAIEGLMAFFLESTLVGLFFFGWDRLGKVQHMAVTWLVALGSNFSALWILVANGWMQNPIASDFN
FETMRMEMLSFSELVLNPVAQVKFVHTVAAGYTCGAMFVLGISSYYLLKGRDLAFAKRSFAIAASFGMAAVLSVIVLGDE
SGYEMGDVQKTKLAAIEAEWDTQPAPASFTLFGIPNQDKMENSYSIQIPYALGLIATRSTDTQVTGLKDLMAQHEVRIRN
GMKAYGLLEELRGGNTDPAVRTEFNKAKQDLGYGLLLKRYTQNVTDATETQIQQATKDSIPRVAPLYFAFRIMVACGVLM
LLIIGLSFWSVIRNRVGQRKWLHRAALYGLPLPWIAIEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDILFSMGLICG
LYTLFLVAEMYLMFKFARLGPSSLKTGRYHFEQPTAAVQEAR
>Mature_522_residues
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFAINFALGVATGLTMEFQFGTN
WSYFSHYVGDIFGAPLAIEGLMAFFLESTLVGLFFFGWDRLGKVQHMAVTWLVALGSNFSALWILVANGWMQNPIASDFN
FETMRMEMLSFSELVLNPVAQVKFVHTVAAGYTCGAMFVLGISSYYLLKGRDLAFAKRSFAIAASFGMAAVLSVIVLGDE
SGYEMGDVQKTKLAAIEAEWDTQPAPASFTLFGIPNQDKMENSYSIQIPYALGLIATRSTDTQVTGLKDLMAQHEVRIRN
GMKAYGLLEELRGGNTDPAVRTEFNKAKQDLGYGLLLKRYTQNVTDATETQIQQATKDSIPRVAPLYFAFRIMVACGVLM
LLIIGLSFWSVIRNRVGQRKWLHRAALYGLPLPWIAIEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDILFSMGLICG
LYTLFLVAEMYLMFKFARLGPSSLKTGRYHFEQPTAAVQEAR

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=522, Percent_Identity=87.3563218390805, Blast_Score=950, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=515, Percent_Identity=59.8058252427184, Blast_Score=642, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58122; Mature: 58122

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
INFALGVATGLTMEFQFGTNWSYFSHYVGDIFGAPLAIEGLMAFFLESTLVGLFFFGWDR
HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKVQHMAVTWLVALGSNFSALWILVANGWMQNPIASDFNFETMRMEMLSFSELVLNPVA
HCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QVKFVHTVAAGYTCGAMFVLGISSYYLLKGRDLAFAKRSFAIAASFGMAAVLSVIVLGDE
HHHHHHHHHHCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGYEMGDVQKTKLAAIEAEWDTQPAPASFTLFGIPNQDKMENSYSIQIPYALGLIATRST
CCCCCCCCCHHHHEEEEECCCCCCCCCCEEEEECCCCHHCCCCEEEEECCEEEEEEECCC
DTQVTGLKDLMAQHEVRIRNGMKAYGLLEELRGGNTDPAVRTEFNKAKQDLGYGLLLKRY
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHH
TQNVTDATETQIQQATKDSIPRVAPLYFAFRIMVACGVLMLLIIGLSFWSVIRNRVGQRK
HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLHRAALYGLPLPWIAIEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDILFSMGLICG
HHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LYTLFLVAEMYLMFKFARLGPSSLKTGRYHFEQPTAAVQEAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHCCC
>Mature Secondary Structure
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
INFALGVATGLTMEFQFGTNWSYFSHYVGDIFGAPLAIEGLMAFFLESTLVGLFFFGWDR
HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKVQHMAVTWLVALGSNFSALWILVANGWMQNPIASDFNFETMRMEMLSFSELVLNPVA
HCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QVKFVHTVAAGYTCGAMFVLGISSYYLLKGRDLAFAKRSFAIAASFGMAAVLSVIVLGDE
HHHHHHHHHHCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGYEMGDVQKTKLAAIEAEWDTQPAPASFTLFGIPNQDKMENSYSIQIPYALGLIATRST
CCCCCCCCCHHHHEEEEECCCCCCCCCCEEEEECCCCHHCCCCEEEEECCEEEEEEECCC
DTQVTGLKDLMAQHEVRIRNGMKAYGLLEELRGGNTDPAVRTEFNKAKQDLGYGLLLKRY
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHH
TQNVTDATETQIQQATKDSIPRVAPLYFAFRIMVACGVLMLLIIGLSFWSVIRNRVGQRK
HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLHRAALYGLPLPWIAIEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDILFSMGLICG
HHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LYTLFLVAEMYLMFKFARLGPSSLKTGRYHFEQPTAAVQEAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]