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The map label for this gene is lpfC [H]

Identifier: 157369296

GI number: 157369296

Start: 1158265

End: 1160778

Strand: Reverse

Name: lpfC [H]

Synonym: Spro_1053

Alternate gene names: 157369296

Gene position: 1160778-1158265 (Counterclockwise)

Preceding gene: 157369297

Following gene: 157369295

Centisome position: 21.3

GC content: 66.11

Gene sequence:

>2514_bases
ATGCAGCAACAACGCACTACAGGAATAAAACCGCTGAGGATGATGATACTGACCGCACTGGCGTTGTCGCCGGCGGTACA
GGCGCGGGACTATTTCAACCCGGCCCTGCTGGAGCAGGGCGACGCCCGCCAAAGCCAGACCGACCTGTCGGTGTTTGAAG
ACGCCGGCGGACAGCCCCCCGGCACCTATCGGGTGGATATCCTGCTCAACGAACGCCTGACCGAGACCCGGATGGTCACC
TTCAGCGCCGCCCCCGACGGCCTGCAACCCTGCCTGAGCGTGGCCGACCTGGCCGACTGGGGGGTGCGAACCGCCCTGTT
CCCGGCGCTTGGCAGCGCAGACAGCCGCTGCGCCAATCTGGCCGCCATTCCCCAGGCGTCGGCGCAGCTGCGTTTCAGTC
AGCAGCAGCTGGTGCTGAGCATTCCCCAGGCGGCCATGACGCCGCAACCGCGCGGTTATGTGCCCTCGTCACAATGGGAC
GAGGGTATCCCGGCGCTGATACTCAATTACAGCCTGACCGGCGCAGACACCACCGCCCGCGGCAGCGGTCGGGGTAGCGA
CAGCAACAGCCAGTTCGCCAACCTGCGTCCCGGCCTGAACGCCGGCCCCTGGCGCTTGCGCAACTACACCACCTGGCGCC
GCAGCAGCGACGGCAAGGATAAATGGGACACGGTCTACACCTACGCGCAGCGCAACCTGATTGGCCTGCAAAGCCAGTTG
ACCCTGGGCGACAGCAATGCCCCGGCCGAGGTGTTTGACGCCGTGCCCTTTCGCGGCGTGCAGCTGGCCTCGGATGACGA
GATGCTGCCCGACAGCCTCCGCGGTTACGCCCCGGTGGTGCGTGGCATCGCCCGCACCAATGCCCAGGTGGTGGTGCGCC
AGAACGGCTATGAAATCTACCGCACCTTTGTGGCCCCCGGCGCCTTCGTGATTAACGACATGTACCCCACCGGCGGCAGC
GGTGACCTGCAGGTCACCATCAAGGAAGCGGACGGCAGCGAACAACAGTTGGTGGTGCCCTTCGCCTCGCTGCCGGTGCT
GCAGCGGGAAGGCCGACTCAAATACAGCCTGACCGGCGGCCAGTACCGCAGCTATGACCGCAGCGTGGATAAAAGCGCCC
TGGTGCAGGGCACCGCGATTTACGGCCTGCCGTGGAACACCACGCTGTACGGCGGCGTGCAGGCGGCGCAACACTACCAG
TCGGCGGCGCTGGGGCTGGGCAACAACCTCGGTGAGTGGGGCGCGTTCTCCGTGGACATGACGCAGTCGCGCAGCCAGCC
GAAAGACCAGGACAGCGCCACCGGCCAGTCATGGCGGGTACGCTACAGCAAGAATCTGGTGCAGACCGGCACCAACTTCG
CCATCGCCGGTTACCGCTACTCCACCGCGGGGTTCTACTCGCTGGCAGAAGTACTGGACGGCTGGCGCAGCAGCAGCACG
CCGTTCTGGCAGAACGAACGGCGGCGCAACCGGGCCGAACTGAGCATGAACCAGCAGCTGGGGCCGCAGGCGGGCAGCCT
GTCGCTGAGCGCGGTGCGGGAAGACTACTGGAACAGCGAACGCAGCCTCGCGTCACTGGGGCTGGGCTACAGCAACAGCT
GGCGCGGCATCAGTTACGGCGTCAACTGGAGCTACAACCGTAACACCCAGGGTGCCACCCGCAGCAACGACCAGCAGATA
GCGCTGAACCTCAACGTGCCGCTGAACCTGTGGGACAACAACAACGCCTGGGTCAACTACGGCCTTAACAGCACCAAGGG
CGGCGCGACCAGCCACAACCTGGGGCTGAGCGGCGTGGCACTCCGTGACAACAGCCTGAGCTGGGGCGTGCAGCAGACCT
ACGGCAGCCGGGGCCAGGGCTACGGCGGCAACAGCAATCTGGACTACCGCGGCACCTACGGCGAAGTGACTGCCGGTTAC
GGCTATGACAAAGACAGCCGGCGCCTGAACTACGGGCTGCAGGGCAGCGTGGTGGCGCACCAGAACGGCATCACGCTGGG
CCAGCCGCTGGGGGAAACCGCCGCGCTGGTAGCGGCCCCGGGCGCGCCGGGGGTGAGCGTGAGCAACCAGACCGGGGTGC
GTACCGACTACCGCGGCTACGCGCTGGTGCCCTACCTGACGCCGTACCGCAACGGCAATGTGGCGCTGAACCCGGAAACG
CTGCCGACGGACGCGGAGATTGAACAGAACAGCCAGCGGGTCACCCCAACGCGGGGCGCGCTGGTCCGCGCCACCTTTAC
AGCCAAAGTGGGTGCACGAGTGCTGATGACCTTAACCCAGGCCGATGGCCGCCCGGTACCCTTTGGTGCCACGGTCAGCG
AGACCGACCAAAATGCGGCCCAGGGCAGCATCGTCGGCGACAGCGGCCAGGTGTACCTGAGTGGCCTGGCCGACAGCGGC
AGCCTGCGGGTGAAATGGGGCAACGGCAGCGGCGGAGAATGCCGGGTTAATTATCGGCTGCCAACAGGAGCCCCTGTTGG
GGGCATCATGCAGATAGAGGGAATCTGTCGATGA

Upstream 100 bases:

>100_bases
TCAGCTGGCGGCTGCTGAACGATTTCGGCGGCGCGGGGCAATGGCTGAAAGGCACCGTGGCCGGCTAGCCGGTCGCGGCA
ACGCAAGCAAGGAGCATGCG

Downstream 100 bases:

>100_bases
ACATTCAGATAATAAAAATATTGAAAATGAAACAGCCAAATATGCGATTGGGAGTCCACCTGCTGGTAAGTGCTATCGTA
TTTGGAATTTATAGTTCAGG

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 837; Mature: 837

Protein sequence:

>837_residues
MQQQRTTGIKPLRMMILTALALSPAVQARDYFNPALLEQGDARQSQTDLSVFEDAGGQPPGTYRVDILLNERLTETRMVT
FSAAPDGLQPCLSVADLADWGVRTALFPALGSADSRCANLAAIPQASAQLRFSQQQLVLSIPQAAMTPQPRGYVPSSQWD
EGIPALILNYSLTGADTTARGSGRGSDSNSQFANLRPGLNAGPWRLRNYTTWRRSSDGKDKWDTVYTYAQRNLIGLQSQL
TLGDSNAPAEVFDAVPFRGVQLASDDEMLPDSLRGYAPVVRGIARTNAQVVVRQNGYEIYRTFVAPGAFVINDMYPTGGS
GDLQVTIKEADGSEQQLVVPFASLPVLQREGRLKYSLTGGQYRSYDRSVDKSALVQGTAIYGLPWNTTLYGGVQAAQHYQ
SAALGLGNNLGEWGAFSVDMTQSRSQPKDQDSATGQSWRVRYSKNLVQTGTNFAIAGYRYSTAGFYSLAEVLDGWRSSST
PFWQNERRRNRAELSMNQQLGPQAGSLSLSAVREDYWNSERSLASLGLGYSNSWRGISYGVNWSYNRNTQGATRSNDQQI
ALNLNVPLNLWDNNNAWVNYGLNSTKGGATSHNLGLSGVALRDNSLSWGVQQTYGSRGQGYGGNSNLDYRGTYGEVTAGY
GYDKDSRRLNYGLQGSVVAHQNGITLGQPLGETAALVAAPGAPGVSVSNQTGVRTDYRGYALVPYLTPYRNGNVALNPET
LPTDAEIEQNSQRVTPTRGALVRATFTAKVGARVLMTLTQADGRPVPFGATVSETDQNAAQGSIVGDSGQVYLSGLADSG
SLRVKWGNGSGGECRVNYRLPTGAPVGGIMQIEGICR

Sequences:

>Translated_837_residues
MQQQRTTGIKPLRMMILTALALSPAVQARDYFNPALLEQGDARQSQTDLSVFEDAGGQPPGTYRVDILLNERLTETRMVT
FSAAPDGLQPCLSVADLADWGVRTALFPALGSADSRCANLAAIPQASAQLRFSQQQLVLSIPQAAMTPQPRGYVPSSQWD
EGIPALILNYSLTGADTTARGSGRGSDSNSQFANLRPGLNAGPWRLRNYTTWRRSSDGKDKWDTVYTYAQRNLIGLQSQL
TLGDSNAPAEVFDAVPFRGVQLASDDEMLPDSLRGYAPVVRGIARTNAQVVVRQNGYEIYRTFVAPGAFVINDMYPTGGS
GDLQVTIKEADGSEQQLVVPFASLPVLQREGRLKYSLTGGQYRSYDRSVDKSALVQGTAIYGLPWNTTLYGGVQAAQHYQ
SAALGLGNNLGEWGAFSVDMTQSRSQPKDQDSATGQSWRVRYSKNLVQTGTNFAIAGYRYSTAGFYSLAEVLDGWRSSST
PFWQNERRRNRAELSMNQQLGPQAGSLSLSAVREDYWNSERSLASLGLGYSNSWRGISYGVNWSYNRNTQGATRSNDQQI
ALNLNVPLNLWDNNNAWVNYGLNSTKGGATSHNLGLSGVALRDNSLSWGVQQTYGSRGQGYGGNSNLDYRGTYGEVTAGY
GYDKDSRRLNYGLQGSVVAHQNGITLGQPLGETAALVAAPGAPGVSVSNQTGVRTDYRGYALVPYLTPYRNGNVALNPET
LPTDAEIEQNSQRVTPTRGALVRATFTAKVGARVLMTLTQADGRPVPFGATVSETDQNAAQGSIVGDSGQVYLSGLADSG
SLRVKWGNGSGGECRVNYRLPTGAPVGGIMQIEGICR
>Mature_837_residues
MQQQRTTGIKPLRMMILTALALSPAVQARDYFNPALLEQGDARQSQTDLSVFEDAGGQPPGTYRVDILLNERLTETRMVT
FSAAPDGLQPCLSVADLADWGVRTALFPALGSADSRCANLAAIPQASAQLRFSQQQLVLSIPQAAMTPQPRGYVPSSQWD
EGIPALILNYSLTGADTTARGSGRGSDSNSQFANLRPGLNAGPWRLRNYTTWRRSSDGKDKWDTVYTYAQRNLIGLQSQL
TLGDSNAPAEVFDAVPFRGVQLASDDEMLPDSLRGYAPVVRGIARTNAQVVVRQNGYEIYRTFVAPGAFVINDMYPTGGS
GDLQVTIKEADGSEQQLVVPFASLPVLQREGRLKYSLTGGQYRSYDRSVDKSALVQGTAIYGLPWNTTLYGGVQAAQHYQ
SAALGLGNNLGEWGAFSVDMTQSRSQPKDQDSATGQSWRVRYSKNLVQTGTNFAIAGYRYSTAGFYSLAEVLDGWRSSST
PFWQNERRRNRAELSMNQQLGPQAGSLSLSAVREDYWNSERSLASLGLGYSNSWRGISYGVNWSYNRNTQGATRSNDQQI
ALNLNVPLNLWDNNNAWVNYGLNSTKGGATSHNLGLSGVALRDNSLSWGVQQTYGSRGQGYGGNSNLDYRGTYGEVTAGY
GYDKDSRRLNYGLQGSVVAHQNGITLGQPLGETAALVAAPGAPGVSVSNQTGVRTDYRGYALVPYLTPYRNGNVALNPET
LPTDAEIEQNSQRVTPTRGALVRATFTAKVGARVLMTLTQADGRPVPFGATVSETDQNAAQGSIVGDSGQVYLSGLADSG
SLRVKWGNGSGGECRVNYRLPTGAPVGGIMQIEGICR

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=841, Percent_Identity=43.281807372176, Blast_Score=663, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=873, Percent_Identity=42.4971363115693, Blast_Score=654, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=861, Percent_Identity=40.650406504065, Blast_Score=627, Evalue=1e-180,
Organism=Escherichia coli, GI1789533, Length=838, Percent_Identity=40.5727923627685, Blast_Score=591, Evalue=1e-170,
Organism=Escherichia coli, GI1786332, Length=838, Percent_Identity=31.145584725537, Blast_Score=350, Evalue=3e-97,
Organism=Escherichia coli, GI1788427, Length=832, Percent_Identity=28.7259615384615, Blast_Score=312, Evalue=7e-86,
Organism=Escherichia coli, GI87081778, Length=818, Percent_Identity=28.9731051344743, Blast_Score=296, Evalue=4e-81,
Organism=Escherichia coli, GI1789610, Length=736, Percent_Identity=24.320652173913, Blast_Score=165, Evalue=9e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 90353; Mature: 90353

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQQRTTGIKPLRMMILTALALSPAVQARDYFNPALLEQGDARQSQTDLSVFEDAGGQPP
CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
GTYRVDILLNERLTETRMVTFSAAPDGLQPCLSVADLADWGVRTALFPALGSADSRCANL
CCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHE
AAIPQASAQLRFSQQQLVLSIPQAAMTPQPRGYVPSSQWDEGIPALILNYSLTGADTTAR
EECCCCHHHEEECCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
GSGRGSDSNSQFANLRPGLNAGPWRLRNYTTWRRSSDGKDKWDTVYTYAQRNLIGLQSQL
CCCCCCCCCCCEEECCCCCCCCCEEECCEEEECCCCCCCCCHHHHHHHHHCCEEECCEEE
TLGDSNAPAEVFDAVPFRGVQLASDDEMLPDSLRGYAPVVRGIARTNAQVVVRQNGYEIY
EECCCCCCHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
RTFVAPGAFVINDMYPTGGSGDLQVTIKEADGSEQQLVVPFASLPVLQREGRLKYSLTGG
EEHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEHHHCCCCCCCCCEEEEECCC
QYRSYDRSVDKSALVQGTAIYGLPWNTTLYGGVQAAQHYQSAALGLGNNLGEWGAFSVDM
CCCCCCCCCCHHHHEECEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEEH
TQSRSQPKDQDSATGQSWRVRYSKNLVQTGTNFAIAGYRYSTAGFYSLAEVLDGWRSSST
HHCCCCCCCCCCCCCCEEEEEECCHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCC
PFWQNERRRNRAELSMNQQLGPQAGSLSLSAVREDYWNSERSLASLGLGYSNSWRGISYG
CCCCCHHHCCHHHCCHHHHCCCCCCCEEHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEC
VNWSYNRNTQGATRSNDQQIALNLNVPLNLWDNNNAWVNYGLNSTKGGATSHNLGLSGVA
EEEEECCCCCCCCCCCCCEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEE
LRDNSLSWGVQQTYGSRGQGYGGNSNLDYRGTYGEVTAGYGYDKDSRRLNYGLQGSVVAH
EECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEECCCCCCEEEEE
QNGITLGQPLGETAALVAAPGAPGVSVSNQTGVRTDYRGYALVPYLTPYRNGNVALNPET
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCC
LPTDAEIEQNSQRVTPTRGALVRATFTAKVGARVLMTLTQADGRPVPFGATVSETDQNAA
CCCCCCCCCCCCCCCCCCCEEEEEEEEHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
QGSIVGDSGQVYLSGLADSGSLRVKWGNGSGGECRVNYRLPTGAPVGGIMQIEGICR
CCCEECCCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCCCC
>Mature Secondary Structure
MQQQRTTGIKPLRMMILTALALSPAVQARDYFNPALLEQGDARQSQTDLSVFEDAGGQPP
CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
GTYRVDILLNERLTETRMVTFSAAPDGLQPCLSVADLADWGVRTALFPALGSADSRCANL
CCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHE
AAIPQASAQLRFSQQQLVLSIPQAAMTPQPRGYVPSSQWDEGIPALILNYSLTGADTTAR
EECCCCHHHEEECCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
GSGRGSDSNSQFANLRPGLNAGPWRLRNYTTWRRSSDGKDKWDTVYTYAQRNLIGLQSQL
CCCCCCCCCCCEEECCCCCCCCCEEECCEEEECCCCCCCCCHHHHHHHHHCCEEECCEEE
TLGDSNAPAEVFDAVPFRGVQLASDDEMLPDSLRGYAPVVRGIARTNAQVVVRQNGYEIY
EECCCCCCHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
RTFVAPGAFVINDMYPTGGSGDLQVTIKEADGSEQQLVVPFASLPVLQREGRLKYSLTGG
EEHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEHHHCCCCCCCCCEEEEECCC
QYRSYDRSVDKSALVQGTAIYGLPWNTTLYGGVQAAQHYQSAALGLGNNLGEWGAFSVDM
CCCCCCCCCCHHHHEECEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEEH
TQSRSQPKDQDSATGQSWRVRYSKNLVQTGTNFAIAGYRYSTAGFYSLAEVLDGWRSSST
HHCCCCCCCCCCCCCCEEEEEECCHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCC
PFWQNERRRNRAELSMNQQLGPQAGSLSLSAVREDYWNSERSLASLGLGYSNSWRGISYG
CCCCCHHHCCHHHCCHHHHCCCCCCCEEHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEC
VNWSYNRNTQGATRSNDQQIALNLNVPLNLWDNNNAWVNYGLNSTKGGATSHNLGLSGVA
EEEEECCCCCCCCCCCCCEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEE
LRDNSLSWGVQQTYGSRGQGYGGNSNLDYRGTYGEVTAGYGYDKDSRRLNYGLQGSVVAH
EECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEECCCCCCEEEEE
QNGITLGQPLGETAALVAAPGAPGVSVSNQTGVRTDYRGYALVPYLTPYRNGNVALNPET
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCC
LPTDAEIEQNSQRVTPTRGALVRATFTAKVGARVLMTLTQADGRPVPFGATVSETDQNAA
CCCCCCCCCCCCCCCCCCCEEEEEEEEHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
QGSIVGDSGQVYLSGLADSGSLRVKWGNGSGGECRVNYRLPTGAPVGGIMQIEGICR
CCCEECCCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]