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The map label for this gene is ycaD [H]

Identifier: 157369084

GI number: 157369084

Start: 934824

End: 936218

Strand: Reverse

Name: ycaD [H]

Synonym: Spro_0839

Alternate gene names: 157369084

Gene position: 936218-934824 (Counterclockwise)

Preceding gene: 157369094

Following gene: 157369078

Centisome position: 17.18

GC content: 57.56

Gene sequence:

>1395_bases
GTGAAAAAAACGTTAGGCGTCTTCTTTCCGTTGTATACCACCACCCTGCTGATGCTGCTGGGTTCAGGGTTGCTCACCAC
TTACATCTCCCTGCGTTTAACCTCTATCCACGTGACCGGTGCGCTGATCGGCGCGATTATTGCCGCCAACTACATCGGCC
TGGTGATCGGCGGCAAGGTCGGGCATTTTCTGATTGCCCGCGTCGGCCATATCCGCGCCTACGTTTCCTGCGCCGGCATT
ATCACCGCGGCGGTGTTGGGGCATGGCCTGACGGAATATATTCCCGTGTGGGTGGTGCTGCGGCTGATTATCGGCATGTG
CATGATGTGTCAATTCATGGTTCTGGAAAGCTGGCTGAACGATCAGGCGGAATCCAATCAGCGCGGAACGGTTTTCGGCT
TTTATATGGCGGCCACCTATCTGGGTATGTCATTGGGTCAGGTGGTGTTAATGCTGCAGAGCAATCTCGGCATTACCACC
CTGCTGCTGATCGCCCTGTGCTTTGCACTCTGCCTGGTGCCTATCGCCCTCACCACCCGCACCAACGCACGGCATATGTC
ACCAGCTCCTATGGAGCTGCGCTACTTTATCGGGGCCATTCCCAAGGTGCTGGCGACCACGCTGGTGATCGGCATGGTGG
TGGGATCTTTCTATGGTTTGGCACCGGTGTACGCAAGTCTGCAATCGCTGACCACCCAGCAAACTGGCCTGTTTATGGCG
ATAGCCATCTTCGCCGGGCTGGTGGCGCAGTTCCCACTCAGTTGGCTGTCAGACCGTTACAACCGAACGCTGCTAATGCG
CATTAACGCCATTTTATTGATCGTCGCTTCCCTGCCGCTGGCGCTGGTGCCGCACATTGATTTTCCGGTGTTGCTGGTGG
TGGGCTTTATTGTCAGCATGTTGCAGTTCACGCTGTATCCGCTGGTGGTCGCCCTGGCGAACGATTTGATCGAACCGGAA
CGGCGCGTATCCCTCGCCGCCTGTTTGCTGATGGCCTTCGGTGTCGGTGCCAGTATCGGCCCATTGGCGGTCGGCTCACT
GATTGAACCACTGGGCGGCAATATTCTGTATGCCTTCTTCTCGCTTTGCGGCGTGCTGCTGGTGGGCTTCAGCCGGACGG
TAAAACAGGACGAGTCGCAGTTTGTGCAGGATGCGCCATTGCCACATATTCCGCTGCCTGACAGCCTGACCAGTTCCCCA
CTTTCTCCGGCGCTGAACCCAACCTTCGATGAGCAGATAATCCACGACACCATGCCACCACCGGAGGCGGCGCCTGATCC
GGTAGAACCGCAGGTCAGTGAAACGTCGGGGGAAGAAGAAGCCGAGGCGGCCATCCCGCAGGGTGCCGATCCTGATGAGG
ATACCGGGCTGAAGAAGGCCCACTCGATGCTTTAA

Upstream 100 bases:

>100_bases
TTAACGGGCGGTGTTTTGCACGAGGGATCTCACCGGGTTGCCTTTGCCGCCGGCAGGGTCAACCCCAGGGCAAACCAGGA
TAAAAGATTAGGATGATAGA

Downstream 100 bases:

>100_bases
GCGGGCCATATTTATATCAGGTTGTGCCTGTTACAGATCGAGGAAAGAACCCAGGCGGTAACCGCGTTCCGCGATCGCGG
TTTTAAGCCCCGGCGAAGTC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MKKTLGVFFPLYTTTLLMLLGSGLLTTYISLRLTSIHVTGALIGAIIAANYIGLVIGGKVGHFLIARVGHIRAYVSCAGI
ITAAVLGHGLTEYIPVWVVLRLIIGMCMMCQFMVLESWLNDQAESNQRGTVFGFYMAATYLGMSLGQVVLMLQSNLGITT
LLLIALCFALCLVPIALTTRTNARHMSPAPMELRYFIGAIPKVLATTLVIGMVVGSFYGLAPVYASLQSLTTQQTGLFMA
IAIFAGLVAQFPLSWLSDRYNRTLLMRINAILLIVASLPLALVPHIDFPVLLVVGFIVSMLQFTLYPLVVALANDLIEPE
RRVSLAACLLMAFGVGASIGPLAVGSLIEPLGGNILYAFFSLCGVLLVGFSRTVKQDESQFVQDAPLPHIPLPDSLTSSP
LSPALNPTFDEQIIHDTMPPPEAAPDPVEPQVSETSGEEEAEAAIPQGADPDEDTGLKKAHSML

Sequences:

>Translated_464_residues
MKKTLGVFFPLYTTTLLMLLGSGLLTTYISLRLTSIHVTGALIGAIIAANYIGLVIGGKVGHFLIARVGHIRAYVSCAGI
ITAAVLGHGLTEYIPVWVVLRLIIGMCMMCQFMVLESWLNDQAESNQRGTVFGFYMAATYLGMSLGQVVLMLQSNLGITT
LLLIALCFALCLVPIALTTRTNARHMSPAPMELRYFIGAIPKVLATTLVIGMVVGSFYGLAPVYASLQSLTTQQTGLFMA
IAIFAGLVAQFPLSWLSDRYNRTLLMRINAILLIVASLPLALVPHIDFPVLLVVGFIVSMLQFTLYPLVVALANDLIEPE
RRVSLAACLLMAFGVGASIGPLAVGSLIEPLGGNILYAFFSLCGVLLVGFSRTVKQDESQFVQDAPLPHIPLPDSLTSSP
LSPALNPTFDEQIIHDTMPPPEAAPDPVEPQVSETSGEEEAEAAIPQGADPDEDTGLKKAHSML
>Mature_464_residues
MKKTLGVFFPLYTTTLLMLLGSGLLTTYISLRLTSIHVTGALIGAIIAANYIGLVIGGKVGHFLIARVGHIRAYVSCAGI
ITAAVLGHGLTEYIPVWVVLRLIIGMCMMCQFMVLESWLNDQAESNQRGTVFGFYMAATYLGMSLGQVVLMLQSNLGITT
LLLIALCFALCLVPIALTTRTNARHMSPAPMELRYFIGAIPKVLATTLVIGMVVGSFYGLAPVYASLQSLTTQQTGLFMA
IAIFAGLVAQFPLSWLSDRYNRTLLMRINAILLIVASLPLALVPHIDFPVLLVVGFIVSMLQFTLYPLVVALANDLIEPE
RRVSLAACLLMAFGVGASIGPLAVGSLIEPLGGNILYAFFSLCGVLLVGFSRTVKQDESQFVQDAPLPHIPLPDSLTSSP
LSPALNPTFDEQIIHDTMPPPEAAPDPVEPQVSETSGEEEAEAAIPQGADPDEDTGLKKAHSML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=340, Percent_Identity=25.2941176470588, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 49730; Mature: 49730

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure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CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA