Click here to switch to the map view.

The map label for this gene is deoB

Identifier: 157368907

GI number: 157368907

Start: 727815

End: 729038

Strand: Direct

Name: deoB

Synonym: Spro_0662

Alternate gene names: 157368907

Gene position: 727815-729038 (Clockwise)

Preceding gene: 157368906

Following gene: 157368908

Centisome position: 13.36

GC content: 57.6

Gene sequence:

>1224_bases
ATGAAACGCACATTTATTATGGTATTAGACTCATTCGGTATTGGCGCAAGCGAAGATGCGGCGAAATTTGGCGATCAGGG
TTCCGATACTCTGGGCCACATTGCCGAGGTTTGTGCTCGCGGTGAAGCCAACGTGGGCCGTCAGGGCCCGTTGACCCTGC
CTAACCTGAGCCGTCTGGGCCTGGGCAAAGCGGCGGAAGAATCCACCGGTACCTTCCCGCAGGGGCTGGACCGCAATGCG
GATATCATTGGCGCCTATGCTCACGCCAGCGAACTCTCTTCCGGTAAGGATACGCCTTCAGGCCACTGGGAAATTGCCGG
CGTGCCGGTATTGTTCGACTGGGGCTATTTCAGCGATGAGCACAACAGCTTCCCGCAGGAGCTGCTGGACAAGCTGGTTG
AGCGCGCCAATCTGCCGGGTTACCTCGGCAACTGCCACTCTTCCGGCACCGTGATCCTCGACCAGTTGGGCGAAGAGCAC
ATGAAAACCGGCAAACCGATTTTCTATACTTCTGCCGACTCGGTCTTCCAGATCGCCTGTCACGAAGAGACCTTCGGCCT
GGACCGTCTGTATGAGTTGTGTGAAATCGCCCGTGAAGAACTGACCGAAGGTGGTTATAACATTGGCCGCGTGATCGCGC
GTCCGTTCCTGGGCGACAAGCCGGGCAACTTCCAGCGTACCGGTAACCGCCATGACCTGGCAGTAGAGCCACCGGCGCCA
ACCGTGCTGAAAAAGCTGGTGGACGAGAAGGGCGGCGAAGTGGTGTCTATCGGGAAAATCGCCGATATCTACGCTAACGT
GGGTATCACCAAAAAGGTCAAGGCGACCGGTATCGATGCGCTGTTCGACGCCACTCTGATCGAAATGGAAAAAGCCGGCG
ACAACACCATTGTGTTCACCAACTTCGTTGATTTTGACTCCTCTTACGGCCACCGCCGTGACGTTGCCGGCTATGCCGCC
GCGCTGGAGCTGTTCGACCGCCGCCTGCCGGAGCTGCTGAAACTGGTTAAAGATGAAGACATCATTATCTTCACCGCTGA
CCACGGCTGTGACCCAACCTGGCCGGGCACCGACCACACCCGTGAACACATCCCGGTCTTGGTTTACGGCCCGAAAGTGA
AGCCTGGCTCGCTGGGCCACCGTGAAACTTTCGCCGACATCGGCCAGACGGTTGCCAGCTACTTTGGCGTGTCGCCGATG
GATTACGGCAAATCCATGTTCTAA

Upstream 100 bases:

>100_bases
ACCAGTCGTTTATAAGCGTATCACTGAATAATTAACGAATCAGGAGTGGCAGCGGCGTTTTCGCTGTCGCCCACAGCGTG
AGAACACGCAGGAGAGCATG

Downstream 100 bases:

>100_bases
GACTTTGTTAGTGCCGGGCGGTTGCCCGGCGTATTTTTTTATTCATGACGACGATTTAAAGGAAGACAATTATGGCTACG
CCGCATATTAATGCTGAAAT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKRTFIMVLDSFGIGASEDAAKFGDQGSDTLGHIAEVCARGEANVGRQGPLTLPNLSRLGLGKAAEESTGTFPQGLDRNA
DIIGAYAHASELSSGKDTPSGHWEIAGVPVLFDWGYFSDEHNSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTEGGYNIGRVIARPFLGDKPGNFQRTGNRHDLAVEPPAP
TVLKKLVDEKGGEVVSIGKIADIYANVGITKKVKATGIDALFDATLIEMEKAGDNTIVFTNFVDFDSSYGHRRDVAGYAA
ALELFDRRLPELLKLVKDEDIIIFTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTVASYFGVSPM
DYGKSMF

Sequences:

>Translated_407_residues
MKRTFIMVLDSFGIGASEDAAKFGDQGSDTLGHIAEVCARGEANVGRQGPLTLPNLSRLGLGKAAEESTGTFPQGLDRNA
DIIGAYAHASELSSGKDTPSGHWEIAGVPVLFDWGYFSDEHNSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTEGGYNIGRVIARPFLGDKPGNFQRTGNRHDLAVEPPAP
TVLKKLVDEKGGEVVSIGKIADIYANVGITKKVKATGIDALFDATLIEMEKAGDNTIVFTNFVDFDSSYGHRRDVAGYAA
ALELFDRRLPELLKLVKDEDIIIFTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTVASYFGVSPM
DYGKSMF
>Mature_407_residues
MKRTFIMVLDSFGIGASEDAAKFGDQGSDTLGHIAEVCARGEANVGRQGPLTLPNLSRLGLGKAAEESTGTFPQGLDRNA
DIIGAYAHASELSSGKDTPSGHWEIAGVPVLFDWGYFSDEHNSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTEGGYNIGRVIARPFLGDKPGNFQRTGNRHDLAVEPPAP
TVLKKLVDEKGGEVVSIGKIADIYANVGITKKVKATGIDALFDATLIEMEKAGDNTIVFTNFVDFDSSYGHRRDVAGYAA
ALELFDRRLPELLKLVKDEDIIIFTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTVASYFGVSPM
DYGKSMF

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=85.5036855036855, Blast_Score=733, Evalue=0.0,
Organism=Escherichia coli, GI1789781, Length=442, Percent_Identity=28.0542986425339, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_SERP5 (A8G9H8)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001476896.1
- ProteinModelPortal:   A8G9H8
- SMR:   A8G9H8
- STRING:   A8G9H8
- GeneID:   5605688
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_0662
- eggNOG:   COG1015
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- ProtClustDB:   PRK05362
- BioCyc:   SPRO399741:SPRO_0662-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 44273; Mature: 44273

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTFIMVLDSFGIGASEDAAKFGDQGSDTLGHIAEVCARGEANVGRQGPLTLPNLSRLG
CCCEEEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LGKAAEESTGTFPQGLDRNADIIGAYAHASELSSGKDTPSGHWEIAGVPVLFDWGYFSDE
CCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCC
HNSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDRLYELCEIAREELTEGGYNIGRVIARPFLGDKPGNFQRTGNRHDLAVEPPAP
CCHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCH
TVLKKLVDEKGGEVVSIGKIADIYANVGITKKVKATGIDALFDATLIEMEKAGDNTIVFT
HHHHHHHHHCCCCEEEECHHHHHHHCCCCCEEHHHCCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSYGHRRDVAGYAAALELFDRRLPELLKLVKDEDIIIFTADHGCDPTWPGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLVYGPKVKPGSLGHRETFADIGQTVASYFGVSPMDYGKSMF
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCC
>Mature Secondary Structure
MKRTFIMVLDSFGIGASEDAAKFGDQGSDTLGHIAEVCARGEANVGRQGPLTLPNLSRLG
CCCEEEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LGKAAEESTGTFPQGLDRNADIIGAYAHASELSSGKDTPSGHWEIAGVPVLFDWGYFSDE
CCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCC
HNSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDRLYELCEIAREELTEGGYNIGRVIARPFLGDKPGNFQRTGNRHDLAVEPPAP
CCHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCH
TVLKKLVDEKGGEVVSIGKIADIYANVGITKKVKATGIDALFDATLIEMEKAGDNTIVFT
HHHHHHHHHCCCCEEEECHHHHHHHCCCCCEEHHHCCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSYGHRRDVAGYAAALELFDRRLPELLKLVKDEDIIIFTADHGCDPTWPGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLVYGPKVKPGSLGHRETFADIGQTVASYFGVSPMDYGKSMF
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA