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The map label for this gene is rraB [H]

Identifier: 157368800

GI number: 157368800

Start: 614450

End: 614878

Strand: Direct

Name: rraB [H]

Synonym: Spro_0555

Alternate gene names: 157368800

Gene position: 614450-614878 (Clockwise)

Preceding gene: 157368797

Following gene: 157368801

Centisome position: 11.28

GC content: 54.55

Gene sequence:

>429_bases
ATGGCAAACAGCGAACAGCTAGACGAACAACGTGAAGAGACCCGCCTGATCATCGAAGAACTGCTGGAAGACGGCAGCGA
TCCAGAGGCGCTCTACACCATCGAACACCATCTCTCTGCCGAGAAGTTTGAAGTGCTGGAGAAAGCCGCTGTCGAAGCCT
TCAAGTTAGGCTTTGAAGTGACCGACGCCGAAGAGCTGGAAGTGGAAGACGGTACCCTGGTGATGTGTTGTGACGTGATC
AGCGAAGTGGGTCTGAACGCCGAAGTGATCGACGCTCAGGTTGAGCAACTGGTCGCACTGGCGGCACGTTGCGGCGTTAA
CTACGACGGCTGGGGCACCTACTTCGAAGATCCGAACGGCGAAGAAGGTGACGATGATGAAGAAGAAGGTGACTTCATCG
ACGAAGACGACGACGGTAAACGCCATTAA

Upstream 100 bases:

>100_bases
TCAACCCCGGGATGGAAATCTTTCACGTTTATCGTGGAAGCAATGCCGACGGTGTGTGAAAATAGGCGCAATACAGGCCA
TTTGACTTGAGGATATAGGC

Downstream 100 bases:

>100_bases
TTAACTTCTGCTTAATTCCTGTGGGCCGGCGCTTGTTGGCCCCTGATAAGAACACATGAAATACCAATCCCTGTTAGCCC
CGATTTTAAACTTCCTGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MANSEQLDEQREETRLIIEELLEDGSDPEALYTIEHHLSAEKFEVLEKAAVEAFKLGFEVTDAEELEVEDGTLVMCCDVI
SEVGLNAEVIDAQVEQLVALAARCGVNYDGWGTYFEDPNGEEGDDDEEEGDFIDEDDDGKRH

Sequences:

>Translated_142_residues
MANSEQLDEQREETRLIIEELLEDGSDPEALYTIEHHLSAEKFEVLEKAAVEAFKLGFEVTDAEELEVEDGTLVMCCDVI
SEVGLNAEVIDAQVEQLVALAARCGVNYDGWGTYFEDPNGEEGDDDEEEGDFIDEDDDGKRH
>Mature_141_residues
ANSEQLDEQREETRLIIEELLEDGSDPEALYTIEHHLSAEKFEVLEKAAVEAFKLGFEVTDAEELEVEDGTLVMCCDVIS
EVGLNAEVIDAQVEQLVALAARCGVNYDGWGTYFEDPNGEEGDDDEEEGDFIDEDDDGKRH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome [H]

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family [H]

Homologues:

Organism=Escherichia coli, GI1790704, Length=120, Percent_Identity=79.1666666666667, Blast_Score=194, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009671
- InterPro:   IPR016716 [H]

Pfam domain/function: PF06877 DUF1260 [H]

EC number: NA

Molecular weight: Translated: 15860; Mature: 15729

Theoretical pI: Translated: 3.56; Mature: 3.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANSEQLDEQREETRLIIEELLEDGSDPEALYTIEHHLSAEKFEVLEKAAVEAFKLGFEV
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHCCHHHHHHHHHHHHHHHHHCCCC
TDAEELEVEDGTLVMCCDVISEVGLNAEVIDAQVEQLVALAARCGVNYDGWGTYFEDPNG
CCCCCEEECCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
EEGDDDEEEGDFIDEDDDGKRH
CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ANSEQLDEQREETRLIIEELLEDGSDPEALYTIEHHLSAEKFEVLEKAAVEAFKLGFEV
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHCCHHHHHHHHHHHHHHHHHCCCC
TDAEELEVEDGTLVMCCDVISEVGLNAEVIDAQVEQLVALAARCGVNYDGWGTYFEDPNG
CCCCCEEECCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
EEGDDDEEEGDFIDEDDDGKRH
CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA