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The map label for this gene is tdcF [C]

Identifier: 157368797

GI number: 157368797

Start: 610986

End: 611384

Strand: Direct

Name: tdcF [C]

Synonym: Spro_0552

Alternate gene names: 157368797

Gene position: 610986-611384 (Clockwise)

Preceding gene: 157368796

Following gene: 157368800

Centisome position: 11.21

GC content: 54.39

Gene sequence:

>399_bases
ATGACGATCAAAAGATACGGTATTGATGGTGGCACCGGCACCGGCGGGCAACACCTGCCCTTTTCCAGAGCGGTAGAAGC
CGGTGGCTGGCTGTATATCTCCGGCCAGACGCCGATGAAAGACGGTGAAGTGGTGGAGGGCGGCATTATCGAGCAGTCGC
GCCTGGCGATCCAAAACTGTCTGGATATTATGGTGGAGGCGGGATACGGCCTGGAAGACGTGGTGCACGTTAAGGTCATT
CTGACCGATGCGCGTTATTTCCAGTCATTCAATAAAGTGTTCCGTGAGTTTTTTGCTGCTCATCCACCGGCGCGTATTTG
TGCGGTTGCCGATCTGGTGGTGGATTGCAAAGTTGAAGTGGATATCACCTGCTATAACGCGGCGCGCATGACCCGATAA

Upstream 100 bases:

>100_bases
GGGTGAACGGCGTACTGAGTTATGAACATCAGGCCGTTACCGGCCTGCGCGCCGGGCGGTTTTTGTGCCGCCAGGGCAAA
TAAATCGACAGGAGCAAGGC

Downstream 100 bases:

>100_bases
ACGCCGGAATGGCCCGGCGCAAGGCGTTAAGTCACCCTGCGCCGGGAGCCGCTTATTTGCTGACGCGATCGTAATAGACC
ATGTCGGCGTTCAGACCCTG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MTIKRYGIDGGTGTGGQHLPFSRAVEAGGWLYISGQTPMKDGEVVEGGIIEQSRLAIQNCLDIMVEAGYGLEDVVHVKVI
LTDARYFQSFNKVFREFFAAHPPARICAVADLVVDCKVEVDITCYNAARMTR

Sequences:

>Translated_132_residues
MTIKRYGIDGGTGTGGQHLPFSRAVEAGGWLYISGQTPMKDGEVVEGGIIEQSRLAIQNCLDIMVEAGYGLEDVVHVKVI
LTDARYFQSFNKVFREFFAAHPPARICAVADLVVDCKVEVDITCYNAARMTR
>Mature_131_residues
TIKRYGIDGGTGTGGQHLPFSRAVEAGGWLYISGQTPMKDGEVVEGGIIEQSRLAIQNCLDIMVEAGYGLEDVVHVKVIL
TDARYFQSFNKVFREFFAAHPPARICAVADLVVDCKVEVDITCYNAARMTR

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=105, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87082213, Length=115, Percent_Identity=32.1739130434783, Blast_Score=66, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322138, Length=125, Percent_Identity=33.6, Blast_Score=80, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6320899, Length=99, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14487; Mature: 14356

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKRYGIDGGTGTGGQHLPFSRAVEAGGWLYISGQTPMKDGEVVEGGIIEQSRLAIQNC
CCEEEECCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHH
LDIMVEAGYGLEDVVHVKVILTDARYFQSFNKVFREFFAAHPPARICAVADLVVDCKVEV
HHHHHHCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEE
DITCYNAARMTR
EEEEECCCCCCC
>Mature Secondary Structure 
TIKRYGIDGGTGTGGQHLPFSRAVEAGGWLYISGQTPMKDGEVVEGGIIEQSRLAIQNC
CEEEECCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHH
LDIMVEAGYGLEDVVHVKVILTDARYFQSFNKVFREFFAAHPPARICAVADLVVDCKVEV
HHHHHHCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEE
DITCYNAARMTR
EEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]