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The map label for this gene is ycfD [H]

Identifier: 157368749

GI number: 157368749

Start: 555728

End: 556849

Strand: Direct

Name: ycfD [H]

Synonym: Spro_0502

Alternate gene names: 157368749

Gene position: 555728-556849 (Clockwise)

Preceding gene: 157368748

Following gene: 157368752

Centisome position: 10.2

GC content: 58.47

Gene sequence:

>1122_bases
ATGGCTTACCAACTGAACCTGAACTGGCCCGAGTTTTTAGAGAAATACTGGCAGAAAAAACCTGTGGTTTTGAAAAATGC
CTTCCCGAACTTTGTTGACCCTATCACGCCAGACGAACTGGCGGGGCTGGCGATGGAGCCGGAAGTTGACAGCCGTCTGG
TCAGCCAGACAGGAGGGCAATGGCAGGCCAGCCACGGTCCGTTTGAACATTTCGATAACCTCGGCGAAACCGGCTGGTCC
TTGCTGGCGCAGGCCGTTAACCATTGGCATGTGCCTTCTGCCGAGCTGGTGCGCCCGTTTCGCGTTTTGCCGGACTGGCG
TCTGGATGACCTGATGATCTCCTTCTCGGTGCCGGGCGGCGGTGTGGGGCCGCACATCGACAACTACGATGTATTCATCA
TTCAGGGGATGGGCAGCCGTCGCTGGCGCGTAGGCGATGCCTTACCGATGCGCCAGTTCTGCCCGCATCCGGCGCTGTTG
CACGTTGATCCGTTCGAGCCGATCATTGATGAAGATCTGGAGCCGGGAGACATCCTGTACATCCCGCCAGGTTTCCCGCA
TGACGGCTTCACCCACGAAACTGCGCTCAACTATTCAGTGGGTTTCCGTGGGCCAAACGACCGCGACCTGATCAGCAGCT
TTGCCGACTACGCACTGGAAAACGATCTCGGTGGCGTGCACTACAGCGATCCTGATTTAACCCTGCGTGAGCATCCGGGG
CGGGTAGAGGAATATGAGCTTGAGCGCCTGCGCACAATGATGGTCGAAATGATCAGCAAGCCGGAAGACTTTAAGCAGTG
GTTTGGCCGCTTTGCCACCACGCCGCGTCATGAGCTGGATATCGCCATGGCGGAGCCGCCGTATGAGGCGCAAGAGGTGC
TGAGTGCGCTGATGGACGGTGAAACCCTGACCCGTTTGAGCGGCTTGCGTGTGCTGCACATCGGCGACAGCTTCTTTATC
AACAGCGAGCGTCTGGACACCGTGGACGCACGCGCGGCCGATGCGCTGTGTCGTTATACCGAACTGGGCCGGCAGGAACT
GGGCGATGCGCTGCAAAACCCGGCGTTTGTGGCTGAGCTGACGGAGCTGATGAACCAGGGCTACTGGTTCTTCAAAGAGT
AG

Upstream 100 bases:

>100_bases
TCCGGGGGCCTGAAGCCATGTTTCCTTGACCCTTAACAAGGTGTGCAGGCCCGCGCTCTCGCATAATCACGCCCGTGGAT
CCTCTTACTGGTGTGATGAT

Downstream 100 bases:

>100_bases
TTGCCGCTGCCTGCTTAATGGCCGGGTGGCATTACGCTTACCCGGCTTGCAAGCATTCCGTTGCCTGCCTGTGGCAGGCC
GTCTGATTAGGGCACCAACT

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MAYQLNLNWPEFLEKYWQKKPVVLKNAFPNFVDPITPDELAGLAMEPEVDSRLVSQTGGQWQASHGPFEHFDNLGETGWS
LLAQAVNHWHVPSAELVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDNYDVFIIQGMGSRRWRVGDALPMRQFCPHPALL
HVDPFEPIIDEDLEPGDILYIPPGFPHDGFTHETALNYSVGFRGPNDRDLISSFADYALENDLGGVHYSDPDLTLREHPG
RVEEYELERLRTMMVEMISKPEDFKQWFGRFATTPRHELDIAMAEPPYEAQEVLSALMDGETLTRLSGLRVLHIGDSFFI
NSERLDTVDARAADALCRYTELGRQELGDALQNPAFVAELTELMNQGYWFFKE

Sequences:

>Translated_373_residues
MAYQLNLNWPEFLEKYWQKKPVVLKNAFPNFVDPITPDELAGLAMEPEVDSRLVSQTGGQWQASHGPFEHFDNLGETGWS
LLAQAVNHWHVPSAELVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDNYDVFIIQGMGSRRWRVGDALPMRQFCPHPALL
HVDPFEPIIDEDLEPGDILYIPPGFPHDGFTHETALNYSVGFRGPNDRDLISSFADYALENDLGGVHYSDPDLTLREHPG
RVEEYELERLRTMMVEMISKPEDFKQWFGRFATTPRHELDIAMAEPPYEAQEVLSALMDGETLTRLSGLRVLHIGDSFFI
NSERLDTVDARAADALCRYTELGRQELGDALQNPAFVAELTELMNQGYWFFKE
>Mature_372_residues
AYQLNLNWPEFLEKYWQKKPVVLKNAFPNFVDPITPDELAGLAMEPEVDSRLVSQTGGQWQASHGPFEHFDNLGETGWSL
LAQAVNHWHVPSAELVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDNYDVFIIQGMGSRRWRVGDALPMRQFCPHPALLH
VDPFEPIIDEDLEPGDILYIPPGFPHDGFTHETALNYSVGFRGPNDRDLISSFADYALENDLGGVHYSDPDLTLREHPGR
VEEYELERLRTMMVEMISKPEDFKQWFGRFATTPRHELDIAMAEPPYEAQEVLSALMDGETLTRLSGLRVLHIGDSFFIN
SERLDTVDARAADALCRYTELGRQELGDALQNPAFVAELTELMNQGYWFFKE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=372, Percent_Identity=65.8602150537634, Blast_Score=519, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42473; Mature: 42342

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQLNLNWPEFLEKYWQKKPVVLKNAFPNFVDPITPDELAGLAMEPEVDSRLVSQTGGQ
CEEEECCCCHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCC
WQASHGPFEHFDNLGETGWSLLAQAVNHWHVPSAELVRPFRVLPDWRLDDLMISFSVPGG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCC
GVGPHIDNYDVFIIQGMGSRRWRVGDALPMRQFCPHPALLHVDPFEPIIDEDLEPGDILY
CCCCCCCCCCEEEEECCCCCCEECCCCCCHHHHCCCCCEEEECCCCHHHCCCCCCCCEEE
IPPGFPHDGFTHETALNYSVGFRGPNDRDLISSFADYALENDLGGVHYSDPDLTLREHPG
ECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHCCCC
RVEEYELERLRTMMVEMISKPEDFKQWFGRFATTPRHELDIAMAEPPYEAQEVLSALMDG
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCC
ETLTRLSGLRVLHIGDSFFINSERLDTVDARAADALCRYTELGRQELGDALQNPAFVAEL
HHHHHHCCEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TELMNQGYWFFKE
HHHHHCCCEEECC
>Mature Secondary Structure 
AYQLNLNWPEFLEKYWQKKPVVLKNAFPNFVDPITPDELAGLAMEPEVDSRLVSQTGGQ
EEEECCCCHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCC
WQASHGPFEHFDNLGETGWSLLAQAVNHWHVPSAELVRPFRVLPDWRLDDLMISFSVPGG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCC
GVGPHIDNYDVFIIQGMGSRRWRVGDALPMRQFCPHPALLHVDPFEPIIDEDLEPGDILY
CCCCCCCCCCEEEEECCCCCCEECCCCCCHHHHCCCCCEEEECCCCHHHCCCCCCCCEEE
IPPGFPHDGFTHETALNYSVGFRGPNDRDLISSFADYALENDLGGVHYSDPDLTLREHPG
ECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHCCCC
RVEEYELERLRTMMVEMISKPEDFKQWFGRFATTPRHELDIAMAEPPYEAQEVLSALMDG
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCC
ETLTRLSGLRVLHIGDSFFINSERLDTVDARAADALCRYTELGRQELGDALQNPAFVAEL
HHHHHHCCEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TELMNQGYWFFKE
HHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]