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The map label for this gene is rarD [H]

Identifier: 157368439

GI number: 157368439

Start: 214401

End: 215288

Strand: Reverse

Name: rarD [H]

Synonym: Spro_0190

Alternate gene names: 157368439

Gene position: 215288-214401 (Counterclockwise)

Preceding gene: 157368440

Following gene: 157368436

Centisome position: 3.95

GC content: 58.9

Gene sequence:

>888_bases
ATGGACGCACAGCAAACACGGCAGGGCATCTTCTTTGCTCTGGCCGCCTATTTTATTTGGGGCATCGCCCCGGCTTATTT
CAAACTGATCCAGCAGGTGCCTGCCGATGAGATCCTCACCCATCGGGTGATTTGGTCGTTCTTCTTTATGCTGGCGCTGA
TCACTCTCGGACGTAACTGGTCACAGGTGCGGGCCGCCTGCCACGACCGTAAACGGCTGTTGCTGCTGGCGGTGACCGCG
TTGCTGATCGGTGGCAACTGGCTGCTGTTTATCTGGGCGGTGAATAACCACCATATGCTGGAAGCCAGTCTGGGCTATTT
CATTAATCCGCTGGTGAATGTGCTGCTGGGGATGTTGTTCCTGGGCGAACGCTTCCGTCGGATGCAGTGGTTGGCGGTGG
CACTGGCTTTTGCCGGCGTCCTGATCCAGCTATGGCAGTTCGGTTCACTGCCGATTATCGGTCTGGGGCTGGCGTTCAGC
TTTGCCTTCTACGGCCTGCTGCGCAAGAAGATCGCCATCGACGCGCAGACCGGCATGCTGATCGAAACCCTGTGGCTGCT
GCCAGTAGCGGCCGCCTATCTGTTCCTGTTCGCCGACAGCCCGACCAGCCACCTCGGTGCCAATGCCTGGTCGCTGAACC
TGTTGCTGGTGGCCGCTGGTATCGTCACCACCATACCGCTGCTGTTCTTTACCGCTGCGGCTACTCGTCTGCGCCTGTCG
ACGCTCGGCTTCTTCCAATACCTCGGCCCCACGCTGATGTTCCTGCTGGCCGTGACCTTCTACGGTGAAACCGTCGGACA
GGACAAACTGGTCACCTTCGGCTTTATCTGGGCGGCGCTGCTGCTGTTTATCCTCGACGCGCTCTACACCCAGCGTAAAC
TGCGTTGA

Upstream 100 bases:

>100_bases
ATCGCCAGCGCCACCGCTACCTACCTGGTCGGGTGATTGTGTGCGGTGAGCGTCTTAAGTACACTCACCGCATCTCCGTT
TTACCCATCTGAGTAACGTC

Downstream 100 bases:

>100_bases
GGTCAGAGCTAGGTTGAGGCCGGCGTGGCGTGGTTGGAAATAAATCGCGCCATCGCCGGCCCCGTCAGCAGAATAGTGAA
CAGCCGCAGTGTCTGCATCG

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MDAQQTRQGIFFALAAYFIWGIAPAYFKLIQQVPADEILTHRVIWSFFFMLALITLGRNWSQVRAACHDRKRLLLLAVTA
LLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNVLLGMLFLGERFRRMQWLAVALAFAGVLIQLWQFGSLPIIGLGLAFS
FAFYGLLRKKIAIDAQTGMLIETLWLLPVAAAYLFLFADSPTSHLGANAWSLNLLLVAAGIVTTIPLLFFTAAATRLRLS
TLGFFQYLGPTLMFLLAVTFYGETVGQDKLVTFGFIWAALLLFILDALYTQRKLR

Sequences:

>Translated_295_residues
MDAQQTRQGIFFALAAYFIWGIAPAYFKLIQQVPADEILTHRVIWSFFFMLALITLGRNWSQVRAACHDRKRLLLLAVTA
LLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNVLLGMLFLGERFRRMQWLAVALAFAGVLIQLWQFGSLPIIGLGLAFS
FAFYGLLRKKIAIDAQTGMLIETLWLLPVAAAYLFLFADSPTSHLGANAWSLNLLLVAAGIVTTIPLLFFTAAATRLRLS
TLGFFQYLGPTLMFLLAVTFYGETVGQDKLVTFGFIWAALLLFILDALYTQRKLR
>Mature_295_residues
MDAQQTRQGIFFALAAYFIWGIAPAYFKLIQQVPADEILTHRVIWSFFFMLALITLGRNWSQVRAACHDRKRLLLLAVTA
LLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNVLLGMLFLGERFRRMQWLAVALAFAGVLIQLWQFGSLPIIGLGLAFS
FAFYGLLRKKIAIDAQTGMLIETLWLLPVAAAYLFLFADSPTSHLGANAWSLNLLLVAAGIVTTIPLLFFTAAATRLRLS
TLGFFQYLGPTLMFLLAVTFYGETVGQDKLVTFGFIWAALLLFILDALYTQRKLR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=293, Percent_Identity=77.4744027303754, Blast_Score=471, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33160; Mature: 33160

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAQQTRQGIFFALAAYFIWGIAPAYFKLIQQVPADEILTHRVIWSFFFMLALITLGRNW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCH
SQVRAACHDRKRLLLLAVTALLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNVLLGMLF
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHH
LGERFRRMQWLAVALAFAGVLIQLWQFGSLPIIGLGLAFSFAFYGLLRKKIAIDAQTGML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IETLWLLPVAAAYLFLFADSPTSHLGANAWSLNLLLVAAGIVTTIPLLFFTAAATRLRLS
HHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGFFQYLGPTLMFLLAVTFYGETVGQDKLVTFGFIWAALLLFILDALYTQRKLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDAQQTRQGIFFALAAYFIWGIAPAYFKLIQQVPADEILTHRVIWSFFFMLALITLGRNW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCH
SQVRAACHDRKRLLLLAVTALLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNVLLGMLF
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHH
LGERFRRMQWLAVALAFAGVLIQLWQFGSLPIIGLGLAFSFAFYGLLRKKIAIDAQTGML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IETLWLLPVAAAYLFLFADSPTSHLGANAWSLNLLLVAAGIVTTIPLLFFTAAATRLRLS
HHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGFFQYLGPTLMFLLAVTFYGETVGQDKLVTFGFIWAALLLFILDALYTQRKLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]