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The map label for this gene is xylR [H]

Identifier: 157368351

GI number: 157368351

Start: 110239

End: 111417

Strand: Direct

Name: xylR [H]

Synonym: Spro_0102

Alternate gene names: 157368351

Gene position: 110239-111417 (Clockwise)

Preceding gene: 157368350

Following gene: 157368352

Centisome position: 2.02

GC content: 56.4

Gene sequence:

>1179_bases
ATGTTTGAAAAGCGCTTTCGCATTACGTTGTTGTTCAACGCCAATAAAGTGTACGACCGCCAGGTGGTTGAGGGCGTAGG
TGAGTATTTACAGGCCTCACAATGTGACTGGGACATCTTTATCGAAGAGGATTTTCGCTGCCGTATCGACAACATCAAGG
ACTGGCTGGGCGATGGGGTGATCGCCGATTTCGACGATGGGGCCATCGAGCAACTGCTGCATAACGTCCGGGTACCGATT
GTCGGGGTGGGCGGCTCTTATCACCGTGATGAGGACTATCCGCCGGTGCACTACATTGCTACCGACAATCAGGCGCTGGT
GGAGGCGGCATTCAGTCACCTGAAAGAAAAAGGCATTAATCGTTTTGCCTTCTATGGTTTGCCCAGCGAAGGCGGTAAAC
GCTGGGCGCAGGAGCGTGAGCATGCTTTCCGCCAGCGGGTCGCGCTGGAGCAGTATCAGGGCGTGGTGTATCAGGGCATG
GCCACCGCGCCGGATAACTGGCAATACGCGCAGAACCGATTGGCGGACTGGGTGCAGACCTTGCCGCAGCAGACCGGCAT
CATCGCGGTGACCGATGCGCGGGCGCGCCATTTGCTGCAGGTGTGTGAACATCTGGACATCGCGGTGCCGGAAAAGCTTT
GCGTGATCGGCATCGACAATGAAGAACTGACGCGTTACCTGTCGCGGGTGGCGCTGTCTTCGGTAGCGCAGGGTACCCGT
CAGATGGGGTATCGTGCCGCCAAGCTGCTGCACCAACTGCTCGATCGCCGTGAGCTACCGCTGCAGCGCATTCTGGTGCC
GCCGGTGAAGGTGATTGAACGTCGTTCTACCGATTTCCGCTCGCTGCGCGATCCGGCGGTAATTCAGGCGATGCATTACA
TTCGTCATCACGCCTGCAAGGGCATCAAGGTCGAGCAGGTGCTGGACGCGATTGGCCTGTCGCGCTCCAACCTGGAAAAA
CGCTTCAGGGATGAAACCGGCGAAACTATCCACCATATGATCCATCAGGAAAAGCTGGATCGCGCCCGCAACCTGTTGAC
GGCTACCTCGTTGACCATCAACGAGATTTCACAGATGTGTGGCTACCCGTCACTGCAGTATTTTTATTCGGTGTTCAAGA
AAGGCTATGACATGACGCCCAAAGATTACAGTGGGCGTTATGGCGAGGTTGGGTATTAG

Upstream 100 bases:

>100_bases
ATAGCGTCTGAGCTCACAGTTATGAGGTGATGCCTGCTGCTCTTGCAGATAGTTGTGCTATCCCAGACCCAGAGGGCAGT
TCGTTTACCGGGGATGTGGC

Downstream 100 bases:

>100_bases
GGTTTGCTTGTCTAATGTAGCCTTATTGGCTACATTTGTAGCTAATAAGGCTACATTACGAGGCGCTATGTACGATCCTT
TGCTTGCTCTCCTGTTCAGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MFEKRFRITLLFNANKVYDRQVVEGVGEYLQASQCDWDIFIEEDFRCRIDNIKDWLGDGVIADFDDGAIEQLLHNVRVPI
VGVGGSYHRDEDYPPVHYIATDNQALVEAAFSHLKEKGINRFAFYGLPSEGGKRWAQEREHAFRQRVALEQYQGVVYQGM
ATAPDNWQYAQNRLADWVQTLPQQTGIIAVTDARARHLLQVCEHLDIAVPEKLCVIGIDNEELTRYLSRVALSSVAQGTR
QMGYRAAKLLHQLLDRRELPLQRILVPPVKVIERRSTDFRSLRDPAVIQAMHYIRHHACKGIKVEQVLDAIGLSRSNLEK
RFRDETGETIHHMIHQEKLDRARNLLTATSLTINEISQMCGYPSLQYFYSVFKKGYDMTPKDYSGRYGEVGY

Sequences:

>Translated_392_residues
MFEKRFRITLLFNANKVYDRQVVEGVGEYLQASQCDWDIFIEEDFRCRIDNIKDWLGDGVIADFDDGAIEQLLHNVRVPI
VGVGGSYHRDEDYPPVHYIATDNQALVEAAFSHLKEKGINRFAFYGLPSEGGKRWAQEREHAFRQRVALEQYQGVVYQGM
ATAPDNWQYAQNRLADWVQTLPQQTGIIAVTDARARHLLQVCEHLDIAVPEKLCVIGIDNEELTRYLSRVALSSVAQGTR
QMGYRAAKLLHQLLDRRELPLQRILVPPVKVIERRSTDFRSLRDPAVIQAMHYIRHHACKGIKVEQVLDAIGLSRSNLEK
RFRDETGETIHHMIHQEKLDRARNLLTATSLTINEISQMCGYPSLQYFYSVFKKGYDMTPKDYSGRYGEVGY
>Mature_392_residues
MFEKRFRITLLFNANKVYDRQVVEGVGEYLQASQCDWDIFIEEDFRCRIDNIKDWLGDGVIADFDDGAIEQLLHNVRVPI
VGVGGSYHRDEDYPPVHYIATDNQALVEAAFSHLKEKGINRFAFYGLPSEGGKRWAQEREHAFRQRVALEQYQGVVYQGM
ATAPDNWQYAQNRLADWVQTLPQQTGIIAVTDARARHLLQVCEHLDIAVPEKLCVIGIDNEELTRYLSRVALSSVAQGTR
QMGYRAAKLLHQLLDRRELPLQRILVPPVKVIERRSTDFRSLRDPAVIQAMHYIRHHACKGIKVEQVLDAIGLSRSNLEK
RFRDETGETIHHMIHQEKLDRARNLLTATSLTINEISQMCGYPSLQYFYSVFKKGYDMTPKDYSGRYGEVGY

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=390, Percent_Identity=81.7948717948718, Blast_Score=673, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 45147; Mature: 45147

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEKRFRITLLFNANKVYDRQVVEGVGEYLQASQCDWDIFIEEDFRCRIDNIKDWLGDGV
CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCC
IADFDDGAIEQLLHNVRVPIVGVGGSYHRDEDYPPVHYIATDNQALVEAAFSHLKEKGIN
EEECCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
RFAFYGLPSEGGKRWAQEREHAFRQRVALEQYQGVVYQGMATAPDNWQYAQNRLADWVQT
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHH
LPQQTGIIAVTDARARHLLQVCEHLDIAVPEKLCVIGIDNEELTRYLSRVALSSVAQGTR
HHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QMGYRAAKLLHQLLDRRELPLQRILVPPVKVIERRSTDFRSLRDPAVIQAMHYIRHHACK
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCC
GIKVEQVLDAIGLSRSNLEKRFRDETGETIHHMIHQEKLDRARNLLTATSLTINEISQMC
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYPSLQYFYSVFKKGYDMTPKDYSGRYGEVGY
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFEKRFRITLLFNANKVYDRQVVEGVGEYLQASQCDWDIFIEEDFRCRIDNIKDWLGDGV
CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCC
IADFDDGAIEQLLHNVRVPIVGVGGSYHRDEDYPPVHYIATDNQALVEAAFSHLKEKGIN
EEECCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
RFAFYGLPSEGGKRWAQEREHAFRQRVALEQYQGVVYQGMATAPDNWQYAQNRLADWVQT
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHH
LPQQTGIIAVTDARARHLLQVCEHLDIAVPEKLCVIGIDNEELTRYLSRVALSSVAQGTR
HHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QMGYRAAKLLHQLLDRRELPLQRILVPPVKVIERRSTDFRSLRDPAVIQAMHYIRHHACK
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCC
GIKVEQVLDAIGLSRSNLEKRFRDETGETIHHMIHQEKLDRARNLLTATSLTINEISQMC
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYPSLQYFYSVFKKGYDMTPKDYSGRYGEVGY
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]