Click here to switch to the map view.

The map label for this gene is xylH [H]

Identifier: 157368350

GI number: 157368350

Start: 108950

End: 110134

Strand: Direct

Name: xylH [H]

Synonym: Spro_0101

Alternate gene names: 157368350

Gene position: 108950-110134 (Clockwise)

Preceding gene: 157368349

Following gene: 157368351

Centisome position: 2.0

GC content: 60.42

Gene sequence:

>1185_bases
ATGTCGAAAAACACGCAGTATGAAGCGATCGTGCCGGCAATGGTGGAGAAAAACCCCATAGTGAAACTAAAATCCATCAA
TTTGCAGGTGTTTGTGATGTTGGCGGCGATAGTCGTCATTATGCTGTTCTTTACCTTTACCACCGAAGGGGCCTATCTCA
GCGCGCGTAATATTTCCAACCTGCTGCGCCAGACGGCGATCACCGGCATTTTGGCGGTCGGCATGGTGTTCGTGATTGTT
TCGGCAGAAATCGATCTGTCGGTCGGCTCAATGATGGGCCTGCTGGGCGGGGCGGCGGCGATTTTTGACGTCTGGCTGGG
TTGGCCACTGCCGTTGACCATCGTGGTGACGCTGCTGGCCGGCCTGCTGTTGGGGGCCTGGAACGGCTGGTGGGTAGCCT
ATCGCAAGGTTCCGTCGTTTATCGTTACCCTGGCCGGGATGCTGGCCTTTCGAGGCATCCTGATCGGCATTACCAATGGC
ACCACGGTCGCGCCGACCAGCGGCGCGATGTCGCAAATTGGCCAGAGCTATTTGCCGAACGGCCTGGGTTTTGGCATCGG
TGCCGTTGGGTTGATGCTGTTTGTCGCCTGGCAGTGGCGGCGACGCAGTCGGCGTGCCCAGCTCGGTTTGCCGGTGGCGA
CAGCAGGCGGTGACGTCACCCGACAAAGCATTTTGGCGCTGCTGGTGCTCGGGGCTATCTATTTGCTCAATGATTACCGT
GGGGTACCGACGCCGGTGCTGATCCTCACCGCACTGATGTTGGCGGGGATATTTATGGCCACCCGCACCGCTTTTGGCCG
TCGGATCTACGCCATCGGCGGCAATATTGACGCTGCGCGGCTGTCGGGCGTTAACGTCGAGCGCACCAAGCTGGCGGTGT
TCGCCATCAACGGCCTGATGGTGGCGATTGCCGGGTTGATCCTCAGTTCGCGCCTGGGTGCCGGTTCGCCTTCGGCGGGT
AATATCGCCGAGTTGGACGCCATCGCCGCCTGCGTGATTGGCGGCACCAGCCTGGCGGGGGGCATCGGTAGCGTGGCCGG
CGCGGTGATGGGCGCATTCATTATGGCGTCGCTGGATAACGGCATGAGCATGCTGGACGTGCCGACCTTCTGGCAGTACA
TCGTCAAGGGCGCCATTTTGCTGCTGGCGGTATGGATGGACTCCGCCACCAAGCGCCGGGCATAA

Upstream 100 bases:

>100_bases
CGGGTATTGGTGATGCACCAGGGGCGTATCAAGGCTTCGTTGGTCAACCAGGGTCTGACCCAGGAACAGGTGATGGAAGC
CGCATTGAGGAGTGAAACAG

Downstream 100 bases:

>100_bases
AAGAATAGCGTCTGAGCTCACAGTTATGAGGTGATGCCTGCTGCTCTTGCAGATAGTTGTGCTATCCCAGACCCAGAGGG
CAGTTCGTTTACCGGGGATG

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSKNTQYEAIVPAMVEKNPIVKLKSINLQVFVMLAAIVVIMLFFTFTTEGAYLSARNISNLLRQTAITGILAVGMVFVIV
SAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTIVVTLLAGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNG
TTVAPTSGAMSQIGQSYLPNGLGFGIGAVGLMLFVAWQWRRRSRRAQLGLPVATAGGDVTRQSILALLVLGAIYLLNDYR
GVPTPVLILTALMLAGIFMATRTAFGRRIYAIGGNIDAARLSGVNVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAG
NIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMASLDNGMSMLDVPTFWQYIVKGAILLLAVWMDSATKRRA

Sequences:

>Translated_394_residues
MSKNTQYEAIVPAMVEKNPIVKLKSINLQVFVMLAAIVVIMLFFTFTTEGAYLSARNISNLLRQTAITGILAVGMVFVIV
SAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTIVVTLLAGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNG
TTVAPTSGAMSQIGQSYLPNGLGFGIGAVGLMLFVAWQWRRRSRRAQLGLPVATAGGDVTRQSILALLVLGAIYLLNDYR
GVPTPVLILTALMLAGIFMATRTAFGRRIYAIGGNIDAARLSGVNVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAG
NIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMASLDNGMSMLDVPTFWQYIVKGAILLLAVWMDSATKRRA
>Mature_393_residues
SKNTQYEAIVPAMVEKNPIVKLKSINLQVFVMLAAIVVIMLFFTFTTEGAYLSARNISNLLRQTAITGILAVGMVFVIVS
AEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTIVVTLLAGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGT
TVAPTSGAMSQIGQSYLPNGLGFGIGAVGLMLFVAWQWRRRSRRAQLGLPVATAGGDVTRQSILALLVLGAIYLLNDYRG
VPTPVLILTALMLAGIFMATRTAFGRRIYAIGGNIDAARLSGVNVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGN
IAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMASLDNGMSMLDVPTFWQYIVKGAILLLAVWMDSATKRRA

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=394, Percent_Identity=82.48730964467, Blast_Score=586, Evalue=1e-169,
Organism=Escherichia coli, GI1790191, Length=359, Percent_Identity=35.3760445682451, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1788896, Length=384, Percent_Identity=31.5104166666667, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI145693152, Length=155, Percent_Identity=43.2258064516129, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI87082395, Length=319, Percent_Identity=32.2884012539185, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1790524, Length=152, Percent_Identity=39.4736842105263, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1788471, Length=342, Percent_Identity=30.9941520467836, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787793, Length=163, Percent_Identity=36.8098159509202, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI145693214, Length=310, Percent_Identity=32.5806451612903, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787794, Length=156, Percent_Identity=30.7692307692308, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 41341; Mature: 41210

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNTQYEAIVPAMVEKNPIVKLKSINLQVFVMLAAIVVIMLFFTFTTEGAYLSARNISN
CCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH
LLRQTAITGILAVGMVFVIVSAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTIVVTLLA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVAPTSGAMSQIGQSYLPN
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECCCCHHHHHHHHHHCCC
GLGFGIGAVGLMLFVAWQWRRRSRRAQLGLPVATAGGDVTRQSILALLVLGAIYLLNDYR
CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCC
GVPTPVLILTALMLAGIFMATRTAFGRRIYAIGGNIDAARLSGVNVERTKLAVFAINGLM
CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCCCHHEEEEHHHHHHH
VAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMASLDN
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHCC
GMSMLDVPTFWQYIVKGAILLLAVWMDSATKRRA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure 
SKNTQYEAIVPAMVEKNPIVKLKSINLQVFVMLAAIVVIMLFFTFTTEGAYLSARNISN
CCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH
LLRQTAITGILAVGMVFVIVSAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTIVVTLLA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVAPTSGAMSQIGQSYLPN
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECCCCHHHHHHHHHHCCC
GLGFGIGAVGLMLFVAWQWRRRSRRAQLGLPVATAGGDVTRQSILALLVLGAIYLLNDYR
CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCC
GVPTPVLILTALMLAGIFMATRTAFGRRIYAIGGNIDAARLSGVNVERTKLAVFAINGLM
CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCCCHHEEEEHHHHHHH
VAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGIGSVAGAVMGAFIMASLDN
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHCC
GMSMLDVPTFWQYIVKGAILLLAVWMDSATKRRA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]