Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157376345

GI number:

Start: 3894146

End: 3897229

Strand: Reverse

Name: Not Available

Synonym: Ssed_3213

Alternate gene names: NA

Gene position: NA

Preceding gene: 157376346

Following gene: 157376344

Centisome position: NA

GC content: NA

Gene sequence:

>3084_bases
ATGAATTTAGCCGAATTTGCCATTAAGCAGCGTATATTTGTGCTGTTCTTCAGTGTGCTTTGCGTGATTGTCGGATTGGT
TTCCTACTTTGAGCTAGGTAAGCTTGAGGACCCCTCATTTACCGTAAAAAGTGCCGTGGTTGTAACGCTTTACCCTGGGG
CTTCGGCTCAAGAGGTTGAGCATCAAGTTACCGACAAAATTGAGACTAAACTGCAAGAGATGGAGTCAATGTGGAAATTG
CGATCCCTGTCTCGCCCAGGGAGCTCGATGATTTTTGTGGATCTGAAAGAGACGACCAACTCAAAAGATCTGCCTCAAGA
GTGGGATCTACTCAGACGTAAAATCAGCGATGTGAAATTAACCTTACCGGCAACTGCCCAGATAAGTATCGTCCAGGATG
AGTTTTCAGAAGTCTACGGCATGCTGTTTAGTGTGTATGGCCAAAACGCTGAACCCGAACAGCTACGCCAATATGCTAAA
GAGCTGCAACGCCGCTTGAAAACCATAGAGGGTATTAAAAAGATTGAACTGCATGGGGTGCAGCAGCAGGCTGTATATGT
AGACTTACCCGATGAACGGTTAGCGCAATACGGGATCTCTTCTGCACAAGTTATCAATCAACTCGCGACCCAAAACCTGA
CCTATGACAGTGGTAGTTTTGCTGCCGATAATGAGCGGATCCGTATCGATCAGAGTAGCGGGTTTAAATCACTGCAAGAT
ATTAAAGATTTGATTATCAAAGGTGGAGTGGGTGAGTACAGTACCGGATTGATCCGTTTAGACGATATTGCAGAGATCAG
TTTAGATTACCAAACACCGGCTACAACCTTGAGTCGTTATAATGGCATGCAGGCGATTACACTGGCGGTTAGCCCTGTTG
CAGGTATCAATGTCGTCAGCTTAGGTGAGCAATTAAATCAAATTATCGGTGACTATCAACAAACACTGCCGTTAGGTATT
GAGATAGGTAAAATAGCTTTTCAGCCAGATGAAGTGGACAAATCGATTGAAGAATTTGTCATTAACTTGCTTGAAAGTGT
GTTGATTGTATTCGCGGTGCTGTTGATTTTTATGGGGTTCAAAAGTGCAACCATAGTCGGTGGTGGCCTTCTGTTTACGA
TTCTATTAACCCTGATCTATATGAACATTGCCGGGGTTGATCTGCAACGTGTCTCTTTAGGCAGCTTTATTCTTGCGCTG
GGCATGCTGGTTGATAACGCCATCGTGATCACCGACCTGTTTGTAGTAAAGCTTAATAAAGGCATGGAGCGCACCAAAGC
CGCGATTGATTCGGTAAAAGAAACATCTAAACCGCTATTGGCAGCCACTGTGATTGCGATTATGGGCTCGAGTCCGGTGC
TGTTTTCTAAAACGGATTCCGGCGAATTTGCTATCTCAGTCTTCTTAATTATCTGCTCCTCACTGCTGTTCTCCTGGTTA
GTCGCTGTCACGTTAACGCCGCTACTGTGTTGGCTGTGGATCAAGCCGGATGCGAAGAAGAACGCTGTCGAGACTAAAAC
GAGTCGATATCAACTGGCGGTAAATTGGACCGTTTTGAATCCGCTTAAAGCCATCTCAATGGTGATCCCATTGTTACTGG
TAACAGCAATAGCTGTGCCTTATGTTGCTGTGAACTTTATACCTAGCTCAGACAGACCTATGGTGTTTCTCGACTACTGG
TTACCCAATGGTGCCCAAATAGAGCAAACATCCTCTGATATGAAGAAAGTTGAACAATGGTTGATAGAACAACCCGAAGT
GAGCAGTATTGCCAGTTATGTGGGGGCCAGTGCGCCGCGCTTTTCGGTCACGGTAGAGCCTGAGCCTTATGACACGAGTT
ATGGCCAAATTTTAGTTAATGTCGATGACTATGAAGGGATTGAATCGCTAACTAAACGTGGAGATATTTGGCTAGCGGAT
AATTTTCCCAATGCAGAGCCTCGTTTTAGAGCATTGAAGCTCGCTACCAAAGATAAGTTCAGCGTCGAGGCACGCTTTAG
CGGCCCGGATCCCAAAGTATTGCATCGGCTGTCAGAGCAAGCGCAGTCGATAATGCGGTCTAATAGTCATTCCAAATACG
TACGTGATGATTGGCGTCAACACAGTAAAGTGATAGCACCTGTGATCAACCAAGAGCAGGCTCGCCGCGCGGGACTTAAT
CGCACGGATATCTCCTTAGCGATTAAACGAGCCACTGAGGGGGTGCCATTGGGCACGCTGAATCAGGGAGATCAACTCAT
CCCGATTAGCTTTCGCAGTGCTAATGCTAACTTAAGCAATTTAGAAACCTTACCCGTACGTTCCCTGCTGGGGATCCACA
GCGTACCCTTGGGCCAAGTTGTCGATAGTTTTGAGCTTAAATCGGAAGAGAGCCTAATCTGGCGTCGTAACCGCGTACCG
ACTATCACCGCCCAAGCGGATGTCTTCGATGCCACGCCTGCTGAGGTTCGTAACCAGATAAAAGCGCAAATTGAAGCCAT
TCAGTTACCTGCGGGCTATGCGTTTGAATGGGGCGGTGAGTATTACGATGAAAACCGCGCGATTACCGATACCTTAAGTC
AGTTGCCGAAAGCGCTCTTGATGATGGTGGTGATCATGGTGGCAATGTTTAACGGCTTTAAGCAACCGGCGATTATCTTG
ATCACTCTTCCGTTAGCGGCGATAGGCGTGACCTGGACCTTGCTGTTGCTCGACAAACCCTTCGGTTTTATGGCGTTGAT
TGGAGCCATCACACTATCGGGGATGATCATTAAAAATGGCATAGTGCTGATGGATCAGATCGAGTTAGAACGGGCTAATA
ACAGACCATTACGTGACGCGGTACAGGCGGCGACAATCAATCGTACCATGGCCATTTCGATGGGGGCGCTCACAACCGCA
CTGGGGATGATCCCGTTACTTAGCGACCGCCTATTCGATCAGATGGCGGCAACCATTATTGGTGGGCTTGCTGCGGCTAC
GCTTTTGTCATTGTTTATCATGCCGGCATTCTACTGCTTGTTTTATCGCGGCTCGGATAAAACTAAAACAGACGCTATAC
CAGATGATTCAACGATAATCGCAGCTATACCGGAGCAAAAATAA

Upstream 100 bases:

>100_bases
CCACTGGGGATACTGTCGTTACTGCGGGCGTGCACTTTCTTAAACCACAGCAACATATTGTGGCCACATCTGTTAATGCG
TTTAGCTACTAGGAGTCGTG

Downstream 100 bases:

>100_bases
AATGAATTTTTACCAAGTCGCCCCTGTTGTAGTGGCAATGATATTGGCTGGTTGTTCGGTCGGCCCGGATTATCAAAAGC
CAGAAACAAATTTAGACAGT

Product: putative efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1027_residues
MNLAEFAIKQRIFVLFFSVLCVIVGLVSYFELGKLEDPSFTVKSAVVVTLYPGASAQEVEHQVTDKIETKLQEMESMWKL
RSLSRPGSSMIFVDLKETTNSKDLPQEWDLLRRKISDVKLTLPATAQISIVQDEFSEVYGMLFSVYGQNAEPEQLRQYAK
ELQRRLKTIEGIKKIELHGVQQQAVYVDLPDERLAQYGISSAQVINQLATQNLTYDSGSFAADNERIRIDQSSGFKSLQD
IKDLIIKGGVGEYSTGLIRLDDIAEISLDYQTPATTLSRYNGMQAITLAVSPVAGINVVSLGEQLNQIIGDYQQTLPLGI
EIGKIAFQPDEVDKSIEEFVINLLESVLIVFAVLLIFMGFKSATIVGGGLLFTILLTLIYMNIAGVDLQRVSLGSFILAL
GMLVDNAIVITDLFVVKLNKGMERTKAAIDSVKETSKPLLAATVIAIMGSSPVLFSKTDSGEFAISVFLIICSSLLFSWL
VAVTLTPLLCWLWIKPDAKKNAVETKTSRYQLAVNWTVLNPLKAISMVIPLLLVTAIAVPYVAVNFIPSSDRPMVFLDYW
LPNGAQIEQTSSDMKKVEQWLIEQPEVSSIASYVGASAPRFSVTVEPEPYDTSYGQILVNVDDYEGIESLTKRGDIWLAD
NFPNAEPRFRALKLATKDKFSVEARFSGPDPKVLHRLSEQAQSIMRSNSHSKYVRDDWRQHSKVIAPVINQEQARRAGLN
RTDISLAIKRATEGVPLGTLNQGDQLIPISFRSANANLSNLETLPVRSLLGIHSVPLGQVVDSFELKSEESLIWRRNRVP
TITAQADVFDATPAEVRNQIKAQIEAIQLPAGYAFEWGGEYYDENRAITDTLSQLPKALLMMVVIMVAMFNGFKQPAIIL
ITLPLAAIGVTWTLLLLDKPFGFMALIGAITLSGMIIKNGIVLMDQIELERANNRPLRDAVQAATINRTMAISMGALTTA
LGMIPLLSDRLFDQMAATIIGGLAAATLLSLFIMPAFYCLFYRGSDKTKTDAIPDDSTIIAAIPEQK

Sequences:
NA

Specific function: NA

COG id: COG0841

COG function: function code V; Cation/multidrug efflux pump

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA