Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157375116

GI number:

Start: 2392308

End: 2394257

Strand: Reverse

Name: Not Available

Synonym: Ssed_1979

Alternate gene names: NA

Gene position: NA

Preceding gene: 157375117

Following gene: 157375115

Centisome position: NA

GC content: NA

Gene sequence:

>1950_bases
ATGCATAAGTGGTTAATCGGCATTTTAACAAACAGATCGCTCGCTATTGTCACGACCTTAATGGCAATAACGGCCATTAC
TGTCACCTGGTCGGCTCATTCAAGCGACTATACTCCCGAACAGCAGAGATACTTAGACGCGCGTAAAGCGCTAGATAACA
ACAAGAGCAAGAGCTATAAACGATTGCGGTCTCAGTTAGACGACTACCCCTTAGCCGTCTATCTCGACTTTCATGCCAAT
ATCAATAGCATTTTGACCCACAAGGGCGAAAAAGCACTGAAGGAACTCGCTCAATTTGAGGCGACCCCTCTGTACAACAC
GGCTAGATTTCGTTACCTGAAACGAGCGGGCTCCCGAAAACAGTGGCAAGATTTTTTAGTTATCAGTCCAAGCAGGCCAA
ACAACATCGCCCTTCAGTGCTACTTCTATCGTGCGCAACTCATCCAAGGCAATGAGGAAATGGCATTTAAAGGAGCCCAA
GCACTCTGGTTATACGGAAAATCTCGCCCAGATGAGTGCGATCCCCTGTTTAAGGCATGGGAGAAGGCCGGCTATCGCTC
ACAAGAGTTAATCTGGTCACGCATGTTACTCAGCTTCAATGCCAACCAATACTCTCTACTGAAGTACCTGTCGAAGAAGG
TCACAACACATAAGACAGAGGCGAAGAAGCTGCTTACGGTTTATAAAGATCCCAGAAGTTTAAGACATACCAAAAAATAT
AAAGGTTCTGCCAAGATATATGCCGATATCGTCGATTCAGGCTTAAGAAAGCTAGCCAGAAAAGACCTTAACCAAGCCGT
AAAGCTCTATGTTACCTACCAAAAAGCGGATAGATTCAGTGACTATCAGGGGCGAAAACTCAGCCGTTACCTGATTAAGC
GAGCGATTATCAAACAGGAGGACAAACTCAAAGGCTTTGTCGATTCGATGCTTCCCCTGCTGGACAGTGATGATCTAATC
GAAGCCAGATTGAGATGGGCGTTACGTGAAAATGATTTTGTGTCGGTCAATACCTTCTTACCCCAGCTCAGTGATCAAAA
AAGCGCTAATCCCAGATGGTTGTATTGGCAATCTAGAATCGATAGATCGGACAACAACACAGATCCCACTAAGTTAACTC
ACCTGAGTCAGCTTCGTAATTTTTATGGTTTTACCGCAGCCAACGAGCTAAAGGCTAACTTCACCTTAGAACACCAAGAC
ACGGTGAGTGACGGGACATTAAGAGAAAAGCTCCACAATGATCTAGGATTAAGCCGTGTCATTGAACTGCTTGCTATCGA
TAAAATCATCGATGCCAGATCTGAATGGATACAAATGTTAAACCGTCACGGCAAAGCGATGCAAAAAGAGTACGCAACGC
TGGCACTGGAAAACCAGTGGCATGACCTTGGCGTGCAGGCCAGCATTCAGGGCAAACTCTGGAACGACATGACACTAAGG
TTCCCCTACGCCGCCGATACAGCCTTTATCAGAGCGAGCAAGAAGCAAAAAGTTAGCATAGATGAACTGAGATCCATAGC
CCGAAGAGAGAGTGCGTTTTATCCCTATGCAACCTCAGGCGTCGGCGCCCGAGGTCTGATGCAATTGATGCCAGCGACGG
CAAAAGAGACTGCCAGAAAAGAGGGGGTCAAGTACAAAGGCCGACGTAGCCTGTATCAGGCGGAGACGAACATTCGTCTG
GGCAGCGCCTATTATGCCGGCTTACTCAAACAGTTTAACAATAATCGGGTACTGGCGACCGCCGCGTACAACGCCGGGCC
TCACAGGGTCAAGCGTTGGCTAAAGCAGACAGAAGGTAAGCTGGATGTCATGACTTTTATCGAATCGATACCTTTTACTG
AAACCCGGGAGTATGTGCAAGCTGTGCTCAGTTATCGCGTGATCTATCAAGTCAAACAGGGGAAATCACCTGAACTGTTT
TCGGCTCAGGAGTTAAATTTCAAATACTAA

Upstream 100 bases:

>100_bases
AAAAGTTAAATTGATCCGGATCAGCCGAGTGAGTCAACCCTTGGCATTCAAGCGCTTTACAGGGATGTAAAACCAATTCT
ATCTGGAAGGAAGACTCAAA

Downstream 100 bases:

>100_bases
TACCGATTGGTATGGCCTCAGAGCGGGAGTCGCTTCACTCATAGTCGGTGAAAAGATCACTGGCTGTTGTCGATTGTTTA
ACCGAACGATGCTCTATATA

Product: lytic transglycosylase, catalytic

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>649_residues
MHKWLIGILTNRSLAIVTTLMAITAITVTWSAHSSDYTPEQQRYLDARKALDNNKSKSYKRLRSQLDDYPLAVYLDFHAN
INSILTHKGEKALKELAQFEATPLYNTARFRYLKRAGSRKQWQDFLVISPSRPNNIALQCYFYRAQLIQGNEEMAFKGAQ
ALWLYGKSRPDECDPLFKAWEKAGYRSQELIWSRMLLSFNANQYSLLKYLSKKVTTHKTEAKKLLTVYKDPRSLRHTKKY
KGSAKIYADIVDSGLRKLARKDLNQAVKLYVTYQKADRFSDYQGRKLSRYLIKRAIIKQEDKLKGFVDSMLPLLDSDDLI
EARLRWALRENDFVSVNTFLPQLSDQKSANPRWLYWQSRIDRSDNNTDPTKLTHLSQLRNFYGFTAANELKANFTLEHQD
TVSDGTLREKLHNDLGLSRVIELLAIDKIIDARSEWIQMLNRHGKAMQKEYATLALENQWHDLGVQASIQGKLWNDMTLR
FPYAADTAFIRASKKQKVSIDELRSIARRESAFYPYATSGVGARGLMQLMPATAKETARKEGVKYKGRRSLYQAETNIRL
GSAYYAGLLKQFNNNRVLATAAYNAGPHRVKRWLKQTEGKLDVMTFIESIPFTETREYVQAVLSYRVIYQVKQGKSPELF
SAQELNFKY

Sequences:
NA

Specific function: NA

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA