| Definition | Shewanella sediminis HAW-EB3, complete genome. |
|---|---|
| Accession | NC_009831 |
| Length | 5,517,674 |
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Identifier: 157374258
GI number:
Start: 1332689
End: 1334383
Strand: Reverse
Name: Not Available
Synonym: Ssed_1119
Alternate gene names: NA
Gene position: NA
Preceding gene: 157374259
Following gene: 157374257
Centisome position: NA
GC content: NA
Gene sequence:
>1695_bases ATGACACAATCAACAACAGAAAAGTACGACTATATTATCGTTGGTGCAGGTAGTGCAGGCTGCGTGTTAGCCAACCGTTT ATCGGCTGACGCAAATAACAGCGTATTACTGATTGAAACCGGCGGCAGCGACAGGAGCATCTTTATTCAGATGCCAACGG CCCTGTCTATTCCCATGAATACCCCAAAATATGCGTGGCAGTTTGAGACCGAAGCCGAGCCTCACTTGGACAATCGCCGC ATGCACTGCCCTCGTGGCAAGGTGCTGGGTGGCTCCTCATCGATCAATGGCATGGTCTATGTCCGCGGGCATGCCCGAGA TTTTGACGAGTGGCAACAAGAAGGTGCTAAAGATTGGGATTATGCCCATTGCCTACCCTACTTCAAAAAAGCGGAAAGCT GGGCGTTTGGTGAAGATGATTATCGCGGTGTTGATGGCCCACTAGCCGTCAACAACGGCAACGAAATGAAAAACCCGTTA TACCAAGCCTTTGTCGATGCGGGTGTCGATGCCGGGTATATGGCGACCAGTGATTATAACGGCGCGCAGCAAGAGGGCTT TGGCCCTATGCACATGACCATTAAAAATGGCGTGCGTTGGTCAACATCTAACGCCTATCTAAGACCGGCCATGAAGCGTG AAAACCTCACCGTCATCACCCATGCCCAGGTACATAAGGTGTTGTTTGAAGGCAAACAAACCGTAGGTGTTCGTTTCGAA CGCAAGGGCAAGATGACAGATGTGCATTGCAGCAAGGAAGTGGTGTTATCGGCAGGCTCTATCGGCTCGCCGCATATACT GCAACTTTCGGGTATTGGCGCCGCAGAGACACTTGCCAAGGCTGGCATCGAACAGGTACATGAGTTGCCGGGTGTGGGTG AGAACCTGCAGGACCATCTCGAGTTCTACTTTCAATTTAAGTGCCTTAAGCCCATTTCGCTCAATGGCAAGATCGACCCG TTAAACAAACTCTTTATCGGCACTCGCTGGATCTTGAACAGAACAGGCCTGGGGGCGACAAACCATTTCGAATCTTGTGG GTTTATTCGCTCTAAAGCGGGACTGGAGTGGCCGGATCTGCAATATCATTTCTTGCCTGCCGCCATGCGCTACGACGGAA AAGAGGCCTTCGCGGGTCACGGCTTCCAGGTCCATATAGGACACAACAAACCAAAGAGTCGCGGCGCGGTGAAAGTGGTA TCGAGCGATGCCCGTGTTGCCCCGAGTATTCAGTTTAACTATCTATCCCATAAGGATGATATAGAAGGCTTTCGCGCCTG CGTTCGGTTAACCCGGGAGATCATCAATCAGCCGGCATTGGATGAATACCGAGGCGAGGAGATACAGCCCGGGACTTCGG TTCAAACCGATGAAGAGATCGATACCTTCGTCAGAAGCTCGGTCGAGAGCGCCTATCACCCCTCTTGTTCGTGCAAGATG GGAGAAGATGCGATGGCGGTGGTGGACTCAGAAACTAAGGTGCATGGTATTCAAGGACTTAGAGTGGTTGATTCCTCTAT TTTCCCCACCATACCTAACGGCAACCTTAACTCGCCGACCATAATGGTGGCGGAGCGCGCAGCCGATATCATCTTGGGCA TGACGCCATTGCCGGCCAGCAGTGCGACAGTGACCTTTGCTCAGCAATGGCAGCAAAAACAGCGGTTACGCGCACCAAAA AGACAACTCGCCTGA
Upstream 100 bases:
>100_bases TGGCCGTGAGAATGGTAGTGAGACCCTAAAAGCATACACCCAAATCAAAGCCGTATACGTTGGTATGCAGCCTCTTGAAA GTCCGTTTTAAGGAGCTGAC
Downstream 100 bases:
>100_bases TCTGTTTTTAATAGACAGATCGGCTACCCAGGTTTAAGGCCAGCCTAAGCCAATAAGGCTAAATGGCCCTAATCGCCACG TTTAATTTATCAAACCTTAA
Product: choline dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>564_residues MTQSTTEKYDYIIVGAGSAGCVLANRLSADANNSVLLIETGGSDRSIFIQMPTALSIPMNTPKYAWQFETEAEPHLDNRR MHCPRGKVLGGSSSINGMVYVRGHARDFDEWQQEGAKDWDYAHCLPYFKKAESWAFGEDDYRGVDGPLAVNNGNEMKNPL YQAFVDAGVDAGYMATSDYNGAQQEGFGPMHMTIKNGVRWSTSNAYLRPAMKRENLTVITHAQVHKVLFEGKQTVGVRFE RKGKMTDVHCSKEVVLSAGSIGSPHILQLSGIGAAETLAKAGIEQVHELPGVGENLQDHLEFYFQFKCLKPISLNGKIDP LNKLFIGTRWILNRTGLGATNHFESCGFIRSKAGLEWPDLQYHFLPAAMRYDGKEAFAGHGFQVHIGHNKPKSRGAVKVV SSDARVAPSIQFNYLSHKDDIEGFRACVRLTREIINQPALDEYRGEEIQPGTSVQTDEEIDTFVRSSVESAYHPSCSCKM GEDAMAVVDSETKVHGIQGLRVVDSSIFPTIPNGNLNSPTIMVAERAADIILGMTPLPASSATVTFAQQWQQKQRLRAPK RQLA
Sequences:
NA
Specific function: NA
COG id: COG2303
COG function: function code E; Choline dehydrogenase and related flavoproteins
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA