Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157373977

GI number:

Start: 994387

End: 998709

Strand: Reverse

Name: Not Available

Synonym: Ssed_0838

Alternate gene names: NA

Gene position: NA

Preceding gene: 157373978

Following gene: 157373973

Centisome position: NA

GC content: NA

Gene sequence:

>4323_bases
ATGAAAAAGCTGAAAATCGATGGTACCTTGCTATCGGCTCATCCCGAAGAACTCCTGATTGACATAGCAAGAGATGCGGG
GATAGCGATCCCCAGTCTTTGCGAGCGGCCAGGCACGGGTAAACACAAGAGTGGCAGTGAAGAGAAAAGCCACTGCAACC
TCTGTGTAGTTGAGATCCATTCTCAAGAGACGACTACAGAGGAGGAGGCCAATCCCTCAACCGTAAGGTCCTGTGAAACG
ACATTGGGTGAGCTTTGTGCCAGTGCCGCAACCGACATGAGCGCAGGCAGCGAAACTCAGATTGAAGTTGTCACTCAATC
GGCCTACCTTAGCCAGCAGCGACAAGCCTCGTTGACAGAAATATTAAGTGACCACTTTGCAGACTGTGAGGCCCCCTGCC
AACAAGCCTGCCCGGCAGGCGTCGATGTACAGTCATACCTGTTTCATATCGCACAAGGCAACCATAAAGAAGCCGTAAAG
GTGATTAAGCAGACCCTGCCACTCCCTCTGTCTATCGGCAGAGTATGCCCCGCATTTTGTGAAACCGAGTGCAGACGAGG
CCTGGTTGATGAGCCTGTAGCAATAAGACAGCTCAAGCGACATGCTGCAGACCTGGATATCGAAGACAGCGAGAGCTATG
TGCCACCTAAGTCTCCGGCAACAGGGAAAAAAGTCGCCATTATAGGCAGTGGACCCGCAGGTATAACGGCCGGATATTAT
CTGTCCAATTCGGGACACGATGTCACCATCTATGAGTCAATGCCAAAAGCCGGCGGCTGGTTACGCTACGGAATTCCTGA
ATACCGTCTCCCTAAGGCGATACTCGATAAAGAGATCGACCTGCTGTGTAAAAACGGTTTAAACATCCAGACTAACATCA
GGCTGGGTGAGCAGATCCACCTTAAGCAGCTTGTCGATGATTTCGATGCAGTATGCTTAGCCATAGGCGCACAAAAAGCA
GTACCGATGAACTATCCGGGTATCGATCTTGAAGGTTGTTACTTAGGTGTCGACTATCTAAAAGATCACTGCACAGAAAA
GCGCTACAGGACAGGAGATAAGGTGGCCGTGATCGGAGGGGGAAACACCGCCATAGATTGCGCGCGAACCGCAAAGCGTG
ACGGAGCCGATGTGACCCTCATCTATCGTCGCACCCGTGACGAGATGCCTGCCGAGCCTTTTGAGATCGAGGAAGCCGAA
CACGAAGGGATTAATTTCCATTTCCTGACAAACCCCATAGAGAATCACAGTGATCTCCATGGAAGAGTAGAGAGTGTCAC
CCTGGAAAAAATGGCATTAGGGGAACCCGATGCGACAGGAAGAAGGGCTCCCATCGCTACCGGAGAGCATTTTACCCAAG
CCTTCGATACCGTTATTCCAGCCGTTTCACAGATGCCGGATATGGAGTTTCTTAAACACCCGGAAAGTCAGCTCACCACA
GGGAAGCTGGCTCTTACCCGCTGGAATACATTCGAAGGTTGCGATCATACTATGTCGGCGGGCCTGTCATCAGGCATCGA
TAAACTCTTTGTATTAGGTGATTCCAGAACGGGACCGGCTACGGCCGTCGCAGCGGTGGCCGACGGCAGAAAAGCCGCTC
AGGCTATCGAAAAGTTGCTGACACAAGGTCTGGCCTGTGAGCTTAGCCCGAAGCAGTTCAATGCCACTAAATCCGGTGAC
AACACTGAGTTGTCGTCGGCACTTTATCCTGATATAAAGCAACGACCTAAGGCCAAGATGTTAGAGCTCGGCCTGCAAGA
GAGAAGCTTTAATTTCAATGAAATTGAACTCGGCTTCGAGCCCGATCAGGCGATGCAAGAGGCAGCCCGATGTCTTGAGT
GTGCATGCCAGGCCAATACCGACTGTAAGCTGCGCGACTATGCGACCGAATACAAGGTTGATTCCACCTCCCTCACCAAT
AGTGAACCGGCGGACGCACCGAGACAATTCAGTATCGATACCAGCAGCCCTTTCATTACCTTCGATGCTAACCGCTGCAT
CAGCTGTGGTGCCTGTGTGGAAGTTTGTCAGGGTCAGGATGGCCATAATGCCATCAGCTTTGCGCCCGATAACTATCAGG
CTCTGCCAACCGAAATTGCAGTCCAACAGTGTAAACGCGCCCCTCGTGCAGGCTTTAGCGCTTCGATGAATGACAGTGAT
TGTGTGCAGTGTGGTAGCTGCGTTCAAGTCTGCCCAACTGGAGCCCTGGTCGATGCGCGGGATAAAACTCAGGGAGTAAG
GATTGAGCTGAAGCAGGTATCGACCATCTGTACCTACTGCGGTATAGGTTGCAGGCTTAATATGCATGTCGATGAAACCG
AAAATAAAATTAAGCGGATCACCGGCGATACCCGCTCAGTCGTCAATGAGGGGATGTTATGTGTCAAGGGCCGCTTCGGT
TTTGACTTTATCTCCAGTGAACAGAGGCTGACTCATCCGCTCATTCGAAAAGAGGGAAAGCTGGTTCGAGCTTCCTGGAG
TGAAGCTTTCGATTATATCGGCAGTAAACTCAGTCCCATTATCGAAAAACATGGCGGTAATGCGCTGGCCGGACTCGCCT
CGGCCAAAGCGACAAATGAAGATAACTATCTATTTCAAAAGCTATTCAGAAGCGTTATCGGCACGAATAATATCGACCAC
TGTGCCAGATTGTGTCATGCATCGACCGTTACCGCCCTCTATGACAGCTTAGGCAGCGGAGCCATGAGCAATGATATTCC
GGGCATTAAAGAGTCCGATCTGATCTTCATATTAGGCTCCGATACCAGCAACGCCCATCCAATCATCGCCTCACGGATTA
AGACGGCTATTCGTGACCATGGTGCCAGACTAATCGTTGCCGATCCCAAGCGAGTAGATATTGCCGATCACGCTCGCCTC
TACGTCAAACAGAGACCCGGCACTGACATCATGCTGCTCAATGCTATCATGCAGCAGATCATTACCAATAACTGGCACGA
TCAGGCCTATATTCAGGACAGAGTCGATGGATTTAGCGCCCTTTACGACGAGGTGATGAAGCCAGACTATAACCTAGGCA
ATGCAGAACTTATTACCGGCGTTGATGCAGCAGATATTGTCGCTATCGCACAGATGATAGGAACTGCAGAGAAGACGGCG
GTCTATTACGCCATGGGGATCACCCAGCATACTTCAGGCCATGACAATGTCACCGCAATTTCCAATCTGCAGTTGCTCTG
CGGGAACATAGGTGTTCGTGGCGCAGGCATTAACCCACTGCGAGGTCAGAGTAATGTTCAGGGAGCATGTGACATGGGCG
CGCTACCGAATTATTTCAGCGGTTATCAAAGAGTCGATGATCCTCTGGTGCAGCGTCAATTCAGACAAGCCTGGAACAAT
CAGGAACTCCCCAACCGGGAGGGCATAGCAGCAACTGAGATGATGCTTTCAATTCTCAAGGGAGATCTGAGAGCACTCTA
CATTATGGGTGAGAACCCGGTACTGAGCGATCCCGATCAGACTCATGTACTCGAAGCTTTGCAGGCTGTAGAGTTTATGA
TTGTGCAAGATATCTTTCTGACTGAGACCGCCGAGCTTGCCGATGTGGTACTCCCGGCCCTGACGTTCGCAGAAAAAACA
GGACACTTCACCAATACCGAGCGCCGGGTACAGCAACTGCAAGTAGCAGTAAAAGCTCCGGGAATTGCTATGGACGACTG
GCAGATAGTACAACAAGTTGCCAACCGTTTAGGCGCCGACTGGCACTATGAAGATGAGAAAGCGATATGGCATGAGATAA
CTCAGGTTACCCCTCAATACCGGGGGATTAGTTGGGACTCAGTCGACATTAACACTGAACATGGCATCAAGGGAGTTCAA
TGGCCCTGCCCGACGCAGAACCATCCAGGCACTCCTGTACTGCATACCAGCCAATTCACCCGTGGCCGGGCACAAATGAG
GCCTGTAAGCCATACGCTTCCCCCGGAGATGCCGTGTAGCGAATATCCGCTTATCCTTTCAACCGGCCGCTTACTCGAGC
AATTTCACACCGGAACCCTCACTCGAAAGACGGCGGGACTGGATGAGCTTGGTGCACCAAAGGTGATGATATCTGTCTAT
GACGCTGAGATATTAGGGATTAATAATGGCGATATGCTAACGATCTCATCTCGCCGTGGGGAGATTGAAATCGCGGCCTT
TGTGACTAAACGAGCCCAAGCGGGAGTGTTGTTTTTACCCTTCCACTTTGCAGAAGCGGCAGCCAATAAACTGACCATCA
ATGCACTCGATCCTATCGCAAAGATCCCCTCGTTTAAGATCTGTGCCATCAAAGCGGAAAAGCTTGAACCGGCAATGGGG
TAA

Upstream 100 bases:

>100_bases
CACTCCCTCCCTACACATAAAGAGACCTCATTGTACCAACAAAGAAATGCCAACTAAGAAACTTGCTCCTGATAGCTAAT
GAATAACGAAGGCTGATACG

Downstream 100 bases:

>100_bases
CGCATTTCAGAGCGTGACATAAACCATCAGCAAAAAAGGGAAGCTAATCGCTTCCCATTTTTTTGTCACAAAGCTTAACG
ACTACACCTTAAACTGCCCG

Product: formate dehydrogenase, alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1440_residues
MKKLKIDGTLLSAHPEELLIDIARDAGIAIPSLCERPGTGKHKSGSEEKSHCNLCVVEIHSQETTTEEEANPSTVRSCET
TLGELCASAATDMSAGSETQIEVVTQSAYLSQQRQASLTEILSDHFADCEAPCQQACPAGVDVQSYLFHIAQGNHKEAVK
VIKQTLPLPLSIGRVCPAFCETECRRGLVDEPVAIRQLKRHAADLDIEDSESYVPPKSPATGKKVAIIGSGPAGITAGYY
LSNSGHDVTIYESMPKAGGWLRYGIPEYRLPKAILDKEIDLLCKNGLNIQTNIRLGEQIHLKQLVDDFDAVCLAIGAQKA
VPMNYPGIDLEGCYLGVDYLKDHCTEKRYRTGDKVAVIGGGNTAIDCARTAKRDGADVTLIYRRTRDEMPAEPFEIEEAE
HEGINFHFLTNPIENHSDLHGRVESVTLEKMALGEPDATGRRAPIATGEHFTQAFDTVIPAVSQMPDMEFLKHPESQLTT
GKLALTRWNTFEGCDHTMSAGLSSGIDKLFVLGDSRTGPATAVAAVADGRKAAQAIEKLLTQGLACELSPKQFNATKSGD
NTELSSALYPDIKQRPKAKMLELGLQERSFNFNEIELGFEPDQAMQEAARCLECACQANTDCKLRDYATEYKVDSTSLTN
SEPADAPRQFSIDTSSPFITFDANRCISCGACVEVCQGQDGHNAISFAPDNYQALPTEIAVQQCKRAPRAGFSASMNDSD
CVQCGSCVQVCPTGALVDARDKTQGVRIELKQVSTICTYCGIGCRLNMHVDETENKIKRITGDTRSVVNEGMLCVKGRFG
FDFISSEQRLTHPLIRKEGKLVRASWSEAFDYIGSKLSPIIEKHGGNALAGLASAKATNEDNYLFQKLFRSVIGTNNIDH
CARLCHASTVTALYDSLGSGAMSNDIPGIKESDLIFILGSDTSNAHPIIASRIKTAIRDHGARLIVADPKRVDIADHARL
YVKQRPGTDIMLLNAIMQQIITNNWHDQAYIQDRVDGFSALYDEVMKPDYNLGNAELITGVDAADIVAIAQMIGTAEKTA
VYYAMGITQHTSGHDNVTAISNLQLLCGNIGVRGAGINPLRGQSNVQGACDMGALPNYFSGYQRVDDPLVQRQFRQAWNN
QELPNREGIAATEMMLSILKGDLRALYIMGENPVLSDPDQTHVLEALQAVEFMIVQDIFLTETAELADVVLPALTFAEKT
GHFTNTERRVQQLQVAVKAPGIAMDDWQIVQQVANRLGADWHYEDEKAIWHEITQVTPQYRGISWDSVDINTEHGIKGVQ
WPCPTQNHPGTPVLHTSQFTRGRAQMRPVSHTLPPEMPCSEYPLILSTGRLLEQFHTGTLTRKTAGLDELGAPKVMISVY
DAEILGINNGDMLTISSRRGEIEIAAFVTKRAQAGVLFLPFHFAEAAANKLTINALDPIAKIPSFKICAIKAEKLEPAMG

Sequences:
NA

Specific function: NA

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA