Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157373237

GI number:

Start: 106612

End: 109413

Strand: Reverse

Name: Not Available

Synonym: Ssed_0096

Alternate gene names: NA

Gene position: NA

Preceding gene: 157373239

Following gene: 157373235

Centisome position: NA

GC content: NA

Gene sequence:

>2802_bases
ATGCTAGCGGCATCATCGAAAATCAAAAACCGAATACTCATTATGCCAAAAATTGCTGAAAACCCTTTAGTTCTTGTGGA
TGGTTCCTCCTACCTATATCGAGCTTATTATGCGCCACCACATCTAACAAACTCTAAAGGTGAAGCAACCGGGGCTGTCT
ATGGCGTAATTAATATGCTTCGTAGCCTGCTTAATCAATATAAGCCCAGCCAGATGGCCGTTGTATTCGATGCGAAAGGA
AAAACCTTTCGTAACGATATGTATGAAGAGTACAAAGCGCATAGACCAGCGATGCCGGATGATCTGCGTTCTCAAATAGA
GCCACTGCACAGAATAATACGTGCTCTGGGCTTACCTCTGGTTTGCATTCCCGGCGTCGAAGCCGATGATGTTATCGGTA
CCATCTCTACTCAAGCCAGTAAGGAAGGTCGAGCCGTCCTTATTAGTACGGGTGATAAAGACATGGCTCAGCTGGTCGAT
GAGAATGTCACGCTTATCAATACTATGACTAACACCATAATGGGACCCTCTGAGGTTACCGAGAAATTTGGCGTCGGTCC
TGAATTAATCATCGATCTGTTAGCACTTCAGGGGGACAAGGCTGACAACATTCCCGGCCTGCCTGGTGTCGGAGAAAAAA
CGGCCCTTGCCATGTTAACCGGCGCAGGAAGCATAGATAAAATTCTTGCTGCACCAGAAAAAATGCCTGAGCTCGGTTTC
AGAGGCTCTAAGACCATGCCCGCTAAATTAGCCGAGCATGGTGATATGTTGAAGCTATCCTACGAGCTCGCAACCATTAA
ACTCGATGTCGAACTTGAGCAGGACTGGAAAGATCTCACCATAGCTCCGGCTGACAAAGATGAATTGATAAAATGCTATG
GCGAGATGGAGTTCAAGCGTTGGTTGGCAGAAGTGCTTGATAACAGGAGCGGCTCAAGTGCATCGACTCAAACGTCAACG
GAAGAAGATGAACTTCCTAAACAAGATATCAAAACTGAATACTCGACGATTCTTACCCATGACGAGCTTGATGAGTGGAT
CGATAAGCTGTCAAAAGCCGAGCTTTTTGCGGTCGACACCGAAACTACCAGCCTCAACTATATGGAGGCGAAACTTGTCG
GTCTCTCTTTTGCTGTAGAAGCGGGTAAAGCAGCCTATCTGCCCTTAGCCCATGACTATCTTGACGCGCCACAGCAACTT
AACCAAGCCGAAGCATTGGCCAAGTTGAAACCATTGCTGGAAAATCCAGAGATTAAAAAAGTGGGCCAGAATTTAAAATA
TGACATGAGTATTCTGGCTAATGTCGGCATAAAGCTGCAGGGTATCGCCTTCGATACTATGCTCGAATCATATGTATTCA
ACTCGGTCGCATCCAAACACAACATGGATGACTTGGCACTGAAATACCTGGGCCATAAAAATATCAGTTTTGAAGAGATC
GCGGGGAAAGGGGCAAAACAGCTTACCTTCAATCAGATTTCATTAGAGGTCGCCGCACCTTATGCGGCCGAAGATGCTGA
CATCACCCTAAGGTTGCACCAACACCTCTGGCCAAGATTACAAAAAGAGCCGGAATTAGCCTCAATATTTACCGAAATAG
AGCTGCCTCTGGTTCAAGTGCTTTCCGATATGGAGCGCCAAGGGGTGCTTATCGACAGCATGCTATTGGGTCAACAGAGC
GAAGAGCTGGCCAGAACCATCGATGAGCTTGAGCAGAAGGCTTATGAAATCGCCGGTGAATCCTTTAACTTAAGCTCACC
AAAACAGCTGCAAGTGCTCTTCTTTGAAAAACTGGGCTACCCGATCATCAAGAAGACGCCTAAAGGTGCGCCATCGACCG
CAGAAGAGGTGTTAGTTGAGCTAGCCTTAGATTACCCATTACCTAAGATTATTCTGCAGCACAGAAGCTTAGCAAAACTA
AAGAGTACCTATACCGATAAACTACCGCTGATGGTCAATGCGCAGACCGGCCGTGTTCATACCAGTTACCACCAGGCTAA
TGCCGCCACCGGACGCCTGTCTTCCAGTGAGCCAAACCTGCAAAACATCCCCATTCGAACCGAAGAGGGACGACGGATCC
GTCATGCATTTATTGCTCGGGAAGGCAGGAAGGTACTTGCTGCCGATTACTCTCAAATTGAGCTACGCATCATGGCACAC
CTTTCTCAGGACAAAGGTTTACTGACCGCATTTGCAGAAGGTAAAGATATTCATAAGGCGACTGCAGCAGAGGTCTTCGA
TGTTGACTTCACAGAGGTCACAACCGAGCAGAGACGCCGCGCCAAGGCGGTTAACTTTGGTTTGATCTATGGCATGTCCG
CATTTGGACTCGCTCGCCAGCTTGATATCCCACGTGGTGAAGCCCAAAAATACATAGATACCTACTTTAAGCGTTATCCG
GGCGTACTTAACTATATGGAAGAGACACGGGCAATCGCAGCCGATCTGGGTTACGTCTCTACACTCTATGGACGACGTTT
ATATCTACCGGCAATTAAAGATAGAAATGCCATGCGACGTCAAGCTGCCGAGCGAGCCGCGATTAACGCTCCGATGCAAG
GCACCGCAGCCGATATCATCAAGAAAGCCATGATTAATGTTGCAGACTGGATTGCTAATGAAACTGATGGTGAGATCACC
CTTATCATGCAGGTGCACGATGAATTAGTATTTGAGGTCGACAGTGATAAAGCCGAAGCACTTCAGGAAAAGGTATGTCA
GTTGATGGCGGAAGCTGCCGATCTTGATGTGGAACTGTTAGCCGAAGCTGGGCTCGGTGACAACTGGGAGCAGGCTCACT
AG

Upstream 100 bases:

>100_bases
GCTCATATCTGGTTGTACATACCACAAGCAATTTTTCACTCACAGAGTTATCCACAGGCTGTAGAATAATTTACAATGGC
TGAAAACGCCCATATGTGGC

Downstream 100 bases:

>100_bases
CCAAACGAACCAGGAAAACTCCCCCCTCCCACTAACGCCCCTACACTTTTGGGGCGTTTCAGTCTCTATGAACCACACCT
TCATTTTTGATATCGGCGGT

Product: DNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>933_residues
MLAASSKIKNRILIMPKIAENPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPSQMAVVFDAKG
KTFRNDMYEEYKAHRPAMPDDLRSQIEPLHRIIRALGLPLVCIPGVEADDVIGTISTQASKEGRAVLISTGDKDMAQLVD
ENVTLINTMTNTIMGPSEVTEKFGVGPELIIDLLALQGDKADNIPGLPGVGEKTALAMLTGAGSIDKILAAPEKMPELGF
RGSKTMPAKLAEHGDMLKLSYELATIKLDVELEQDWKDLTIAPADKDELIKCYGEMEFKRWLAEVLDNRSGSSASTQTST
EEDELPKQDIKTEYSTILTHDELDEWIDKLSKAELFAVDTETTSLNYMEAKLVGLSFAVEAGKAAYLPLAHDYLDAPQQL
NQAEALAKLKPLLENPEIKKVGQNLKYDMSILANVGIKLQGIAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEI
AGKGAKQLTFNQISLEVAAPYAAEDADITLRLHQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQS
EELARTIDELEQKAYEIAGESFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLPKIILQHRSLAKL
KSTYTDKLPLMVNAQTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGRKVLAADYSQIELRIMAH
LSQDKGLLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRGEAQKYIDTYFKRYP
GVLNYMEETRAIAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINVADWIANETDGEIT
LIMQVHDELVFEVDSDKAEALQEKVCQLMAEAADLDVELLAEAGLGDNWEQAH

Sequences:
NA

Specific function: NA

COG id: COG0749

COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA