Click here to switch to the map view.

The map label for this gene is ycfS [H]

Identifier: 157159394

GI number: 157159394

Start: 1246869

End: 1247831

Strand: Reverse

Name: ycfS [H]

Synonym: EcE24377A_1235

Alternate gene names: 157159394

Gene position: 1247831-1246869 (Counterclockwise)

Preceding gene: 157158427

Following gene: 157157182

Centisome position: 25.06

GC content: 53.27

Gene sequence:

>963_bases
GTGATGATCAAAACGCGTTTTTCTCGCTGGCTAACGTTTTTTACGTTCGCCGCTGCCGTGGCGCTGGCGCTACCGGCAAA
AGCCAACACCTGGCCGCTGCCGCCAGCGGGCAGTCGTCTGGTTGGCGAAAACAAATTTCATGTGGTGGAAAATGACGGTG
GTTCTCTGGAAGCCATCGCCAAAAAATATAACGTCGGCTTTCTCGCTCTGTTACAGGCTAACCCTGGCGTTGATCCTTAC
GTACCGCGCGCGGGCAGCGTGTTAACGATCCCGTTGCAAACCCTACTTCCAGACGCGCCGCGCGAAGGCATTGTGATCAA
CATTGCGGAGCTGCGTCTCTATTACTACCCGCCGGGTAAAAATTCGGTAACCGTGTATCCAATAGGTATTGGTCAGTTAG
GTGGTGACACGCTGACACCGACAATGGTGACCACCGTTTCAGACAAACGTGCAAACCCAACCTGGACGCCAACGGCAAAC
ATCCGCGCCCGTTATAAAGCACAGGGAATTGAGTTGCCTGCGGTAGTGCCGGCTGGACCGGATAACCCAATGGGCCATCA
TGCGATTCGTCTGGCGGCCTATGGCGGCGTTTATTTGCTTCACGGTACGAACGCCGATTTCGGCATTGGCATGCGGGTAA
GTTCTGGCTGTATTCGTCTGCGGGATGACGATATCAAAACACTCTTTAGCCAGGTCACCCCAGGCACCAAAGTGAATATC
ATCAACACTCCGATAAAAGTCTCTGCCGAACCAAACGGTGCGCGTCTGGTTGAAGTACATCAGCCGCTGTCAGAGAAGAT
TGATGACGATCCGCAGCTGCTGCCAATTACGCTGAATTGCGCAATGCAATCATTTAAAGATGCAGCACAAACTGACGCTG
AAGTGATGCAACATGTGATGGATGTCCGTTCCGGGATGCCGGTGGATGTCCGCCGTCATCAAGTGAGCCCACAAACTCTG
TAA

Upstream 100 bases:

>100_bases
CAAATTCTTTGCACTTCCCTGCACTATCCGACACTGTCACCATCCATAATTCAGGCTTATCTGTTTATTACAATAACCTT
ATATTTATTATGGATTTTTG

Downstream 100 bases:

>100_bases
ATCCTGGATAAAAAAAATCCCCGCGACACGGCATGTCGCGGGGAAAAAATCAGCAGTAGCAGGCATTAATGAGGGTTAAT
GCTTATTTATAAATTACTGC

Product: LysM/ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPY
VPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
IRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNCAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL

Sequences:

>Translated_320_residues
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPY
VPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
IRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNCAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL
>Mature_320_residues
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPY
VPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
IRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNCAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=320, Percent_Identity=99.375, Blast_Score=650, Evalue=0.0,
Organism=Escherichia coli, GI1787968, Length=300, Percent_Identity=51, Blast_Score=297, Evalue=7e-82,
Organism=Escherichia coli, GI1787040, Length=311, Percent_Identity=49.5176848874598, Blast_Score=290, Evalue=1e-79,
Organism=Escherichia coli, GI1788299, Length=299, Percent_Identity=48.8294314381271, Blast_Score=279, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 34636; Mature: 34636

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCHHHHH
KKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGK
HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCC
NSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGP
CCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCC
DNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
CCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCHHHHHHHHCCCCCEEEE
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNCAMQSFKDAAQTDAEVMQHVM
EECCEEEEECCCCCEEEEECCCHHHHCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHH
DVRSGMPVDVRRHQVSPQTL
HHHCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCHHHHH
KKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGK
HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCC
NSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGP
CCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCC
DNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
CCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCHHHHHHHHCCCCCEEEE
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNCAMQSFKDAAQTDAEVMQHVM
EECCEEEEECCCCCEEEEECCCHHHHCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHH
DVRSGMPVDVRRHQVSPQTL
HHHCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]