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The map label for this gene is ydjF [H]

Identifier: 157158664

GI number: 157158664

Start: 1979718

End: 1980476

Strand: Reverse

Name: ydjF [H]

Synonym: EcE24377A_1994

Alternate gene names: 157158664

Gene position: 1980476-1979718 (Counterclockwise)

Preceding gene: 157159254

Following gene: 157155243

Centisome position: 39.77

GC content: 42.16

Gene sequence:

>759_bases
GTGGCGGCAAAAGACAGGATTCAGGCAATTAAGCAAATGGTTGCCAACGATAAAAAGGTGACAGTCTCAAATTTGAGTGG
GATTTTTCAGGTAACCGAAGAAACCATTCGCCGCGATCTTGAGAAGCTGGAAGATGAAGGCTTTTTGACCAGAACCTATG
GTGGTGCTGTTTTAAATACAGCGATGTTGACGGAGAATATCCATTTTTATAAGCGCGCTTCATCGTTTTATGAAGAGAAG
CAGCTTATTGCACGCAAGGCACTACCCTTTATCGACAATAAAACCACCATGGCAGCCGATTCCAGTAGTACCGTAATGGA
ATTGCTCAAATTGTTACAGGACCGTAGTGGCCTGACGTTGCTAACCAACTCGGCGGAAGCGATTCATGTTCTGGCTCAGT
CAGAAATTAAAGTCGTTTCAACGGGTGGGGAACTAAACAAAAATACACTTTCACTGCAAGGAAGAATTACTAAAGAGATC
ATCAGGCGCTATCATGTCGATATCATGGTAATGAGTTGTAAAGGTCTTGATATTAACAGCGGCGCGCTGGACTCTAATGA
AGCGGAAGCTGAAATCAAAAAGACAATGATCCGTCAGGCGACAGAAGTTGCGTTATTGGTTGATCACTCTAAGTTTGATC
GCAAAGCTTTTGTCCAGTTAGCTGATTTTAGTCATATTAATTACATAATAACTGATAAATCACCGGGTGTAGAGTGGATA
GCATTTTGCAAAGACAATAATATCCAGCTGGTGTGGTAA

Upstream 100 bases:

>100_bases
TGTGATGAAAATCTGTGATTCAAACAGGTTATTTTGAAAGTAAACATCGGTTATGCGATAATCGCGCTAATGTGATGTAA
AAAGATACAGGGGTGTAATC

Downstream 100 bases:

>100_bases
TTTAAGCACACGTTGTCAATATTATTTGTTCCTGCGCCTTGAAATAAAATGATGATAAAGATGCGGCAAGTGAATTTGCC
GCAATTGCTACCTTTTTAGC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEK
QLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEI
IRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGVEWI
AFCKDNNIQLVW

Sequences:

>Translated_252_residues
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEK
QLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEI
IRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGVEWI
AFCKDNNIQLVW
>Mature_251_residues
AAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEKQ
LIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEII
RRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGVEWIA
FCKDNNIQLVW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788069, Length=252, Percent_Identity=99.6031746031746, Blast_Score=516, Evalue=1e-148,
Organism=Escherichia coli, GI1789829, Length=251, Percent_Identity=29.4820717131474, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1789170, Length=231, Percent_Identity=32.9004329004329, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1789059, Length=234, Percent_Identity=31.1965811965812, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87082344, Length=246, Percent_Identity=25.609756097561, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1789519, Length=250, Percent_Identity=24.4, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787540, Length=228, Percent_Identity=25.8771929824561, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787063, Length=250, Percent_Identity=21.2, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI226510968, Length=233, Percent_Identity=25.3218884120172, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790753, Length=237, Percent_Identity=24.0506329113924, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28290; Mature: 28159

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT
CCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
AMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTL
HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEE
LTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINS
EECCCHHEEEEECCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHEEEEEEECCCCCCC
GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGVEWI
CCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCEEE
AFCKDNNIQLVW
EEEECCCEEEEC
>Mature Secondary Structure 
AAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT
CCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
AMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTL
HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEE
LTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINS
EECCCHHEEEEECCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHEEEEEEECCCCCCC
GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGVEWI
CCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCEEE
AFCKDNNIQLVW
EEEECCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]