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The map label for this gene is hofM [H]

Identifier: 157158580

GI number: 157158580

Start: 3836650

End: 3837429

Strand: Reverse

Name: hofM [H]

Synonym: EcE24377A_3866

Alternate gene names: 157158580

Gene position: 3837429-3836650 (Counterclockwise)

Preceding gene: 157159327

Following gene: 157155814

Centisome position: 77.06

GC content: 57.31

Gene sequence:

>780_bases
ATGGCATTTAAGATCTGGCAAATTGGTTTGCATTTACAACAGCAAGAAGCGGTAGCGGTTGCGATCGTGCGGGGAGCAAA
AGAATGCTTTTTGCAACGCTGGTGGCGGTTGCCGCTGGAGAACGACATTATCAAAGATGGGCGGATTGTTGATGCGCAGC
AGCTGGCTAAAACGTTGTTACCGTGGAGTCGCGAACTGCCGCAGCGTCATCACATTATGTTGGCGTTTCCCGCCAGTCGC
ACATTACAGCGGTCATTTCCGCGCCCGTCGATGTCCCTTGGTGAGCGGGAGCAAACGGCCTGGCTGTCAGGGACGATGGC
CCGCGAGCTGGATATGGATCCGGACTCCCTGCGCTTCGATTACAGCGAAGACTCACTCAGCCCCGCCTATAACGTGACTG
CCGCGCAAAGCAAAGAGCTGGCAACGCTGCTTACTCTGGCAGAAAGGTTGCGTGTTCATGTTAGTGCGATCACCCCGGAT
GCCAGTGCATTACAGCGATTCCTGCCTTTTTTACCTTCTCATCAGCAATGTCTGGCCTGGCGTGATAACGAACAGTGGCT
GTGGGCGACACGCTATCGCTGGGGGCGCAAACTGGCGGTGGGGATGACTAGCGCGAAGGAGCTGGCGGCAGCGTTATCCG
TTGATCCCGAAAGCGTCGCGATATGTGGCGAAGGGGGATTTGATCCCTGGGAGGCCGTTTCTGTTCGTCAGCCGCCGCTA
CCGCCGTCAGGTGGAGACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGA

Upstream 100 bases:

>100_bases
TTCATTTGGGCAGTTTATAAACAAACGCGCGGTAGTATAAAGGCAAGCCAGACGCATTGATATACCCGTCAGAGTGACGG
GTGATAAGGAGATCATCACA

Downstream 100 bases:

>100_bases
TGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTT
GCGCCTCTGCTGCTGGCCGT

Product: HofM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASR
TLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL
PPSGGDFAIALGLALGKAY

Sequences:

>Translated_259_residues
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASR
TLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL
PPSGGDFAIALGLALGKAY
>Mature_258_residues
AFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASRT
LQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDA
SALQRFLPFLPSHQQCLAWRDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPLP
PSGGDFAIALGLALGKAY

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082257, Length=259, Percent_Identity=99.2277992277992, Blast_Score=521, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29060; Mature: 28928

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLL
CCEEEEEECCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECHHHHHHHHC
PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD
CHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCCCCCCCEEEC
YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW
CCCCCCCCCEEECHHCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCHHEEE
RDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL
ECCCCEEEEEHHHCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCCC
PPSGGDFAIALGLALGKAY
CCCCCCEEEEEEHHHHCCC
>Mature Secondary Structure 
AFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLL
CEEEEEECCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECHHHHHHHHC
PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD
CHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCCCCCCCEEEC
YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW
CCCCCCCCCEEECHHCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCHHEEE
RDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL
ECCCCEEEEEHHHCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCCC
PPSGGDFAIALGLALGKAY
CCCCCCEEEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]