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The map label for this gene is yciC

Identifier: 157158416

GI number: 157158416

Start: 1416119

End: 1416862

Strand: Reverse

Name: yciC

Synonym: EcE24377A_1413

Alternate gene names: 157158416

Gene position: 1416862-1416119 (Counterclockwise)

Preceding gene: 157157141

Following gene: 157158909

Centisome position: 28.45

GC content: 49.6

Gene sequence:

>744_bases
ATGTCTATCACGGCGCAGTCCGTATACCGTGACACCGGAAATTTCTTCCGTAATCAATTTATGACCATTCTGTTGGTATC
GTTGCTATGTGCGTTTATCACAGTGGTGTTAGGGCATGTTTTCTCACCCAGTGATGCACAGCTTGCGCAGCTCAATGACG
GCGTGCCCGTTAGCGGCAGTAGTGGGTTGTTCGACCTGGTTCAGAATATGTCACCGGAACAGCAACAAATTTTGCTGCAG
GCTTCAGCGGCGTCCACTTTTTCAGGATTAATCGGTAACGCCATTCTCGCCGGAGGCGTAATATTAATTATCCAGCTGGT
GTCTGCGGGTCAGAGAGTCAGTGCGCTGCGAGCTATTGGTGCCAGTGCGCCGATATTGCCCAAGTTATTTATTCTGATTT
TTCTGACTACCCTTTTAGTACAGATTGGCATCATGCTGGTGGTCGTTCCGGGACTTATCATGGCCATTTTACTGGCCCTG
GCACCGGTGATGCTGGTACAGGACAAAATGGGCATTTTTGCCTCGATGCGTAGCAGTATGCGGCTGACTTGGGCGAATAT
GCGTCTGGTGGCACCCGCAGTACTGAGCTGGTTGCTGGCAAAAACACTGTTGCTGCTTTTTGCCTCTTCTTTTGCCGCAT
TAACCCCGGAAATTGGTGCCGTACTGGCGAACACCTTGAGCAACCTGATTTCTGCCATATTGCTCATCTATCTGTTCCGC
CTGTATATGTTGATTCGCCAATAA

Upstream 100 bases:

>100_bases
AGATATGCTTTTCCATACAAGACCTGATGCTGCCACCCGAGGCTTAACCAGGGTACAATTGCCCGCTAATTAACACCTGC
ATAAAACTCAAGGAGAGTGC

Downstream 100 bases:

>100_bases
CCTTAAGCATTTGATTACGGAATCGTAAAATGAAGCAGTTTCTTGATTTTTTACCGCTGGTTGTCTTTTTCGCGTTTTAC
AAGATTTATGACATCTATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQ
ASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGLIMAILLAL
APVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFR
LYMLIRQ

Sequences:

>Translated_247_residues
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQ
ASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGLIMAILLAL
APVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFR
LYMLIRQ
>Mature_246_residues
SITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQA
SAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGLIMAILLALA
PVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFRL
YMLIRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0259 family

Homologues:

Organism=Escherichia coli, GI1787508, Length=247, Percent_Identity=99.1902834008097, Blast_Score=475, Evalue=1e-135,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCIC_ECO24 (A7ZL36)

Other databases:

- EMBL:   CP000800
- RefSeq:   YP_001462515.1
- STRING:   A7ZL36
- EnsemblBacteria:   EBESCT00000021215
- GeneID:   5589338
- GenomeReviews:   CP000800_GR
- KEGG:   ecw:EcE24377A_1413
- NMPDR:   fig|331111.3.peg.3871
- eggNOG:   NOG45482
- GeneTree:   EBGT00050000011938
- HOGENOM:   HBG391222
- OMA:   YLFRFYM
- ProtClustDB:   PRK02868
- BioCyc:   ECOL331111:ECE24377A_1413-MONOMER
- HAMAP:   MF_01067
- InterPro:   IPR009627

Pfam domain/function: PF06790 UPF0259

EC number: NA

Molecular weight: Translated: 26433; Mature: 26302

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1cd5cc94)-; HASH(0x1cf181b4)-; HASH(0x1a809758)-; HASH(0x1d15bfa8)-; HASH(0x1c3d2bd8)-; HASH(0x1cd3a8f4)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCC
SGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIG
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
ASAPILPKLFILIFLTTLLVQIGIMLVVVPGLIMAILLALAPVMLVQDKMGIFASMRSSM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LYMLIRQ
HHHHHCH
>Mature Secondary Structure 
SITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCC
SGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIG
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
ASAPILPKLFILIFLTTLLVQIGIMLVVVPGLIMAILLALAPVMLVQDKMGIFASMRSSM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LYMLIRQ
HHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA