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The map label for this gene is yfcS [H]

Identifier: 157157497

GI number: 157157497

Start: 2622104

End: 2622829

Strand: Reverse

Name: yfcS [H]

Synonym: EcE24377A_2631

Alternate gene names: 157157497

Gene position: 2622829-2622104 (Counterclockwise)

Preceding gene: 157157705

Following gene: 157156990

Centisome position: 52.67

GC content: 48.9

Gene sequence:

>726_bases
TTGGGTGCTACGACGCTAGCGTTACTGCTTAGCGCTGCCAGTTTATCTGCCCAGGCTTCTGTAACGCCAGATCGTACCCG
TTTGATATTTAATGAAAGCGACAAATCAATCAGCGTGACGTTGCGCAATAACGATCCGAAACTGCCTTATCTGGCCCAAA
GCTGGATCGAAGATGAAAAGGGTAACAAAATCAGTTCACCGTTAACTGTTCTGCCACCGGTGCAACGCATCGATTCAATG
ATGAACGGGCAGGTAAAAGTGCAGGGAATGCCGGATATCAACAAATTGCCTGCCGATCGTGAAAGCCTGTTCTACTTCAA
CGTGCGTGAGATCCCGCCAAAATCAAACAAAGCCAACACGCTGCAAATAGCACTACAAACGCGTATTAAGTTGTTCTGGC
GACCGAAGGCGCTGGAGAACGTCAGCATGAAAAACCCCTGGCAATATAAGGTTACTTTAACCCGCAACGGTCAGGAATTT
ACCGTCAATAACCCGACGCCGTATTACGTCATTTTCAGTAATGCCAGCGCGGAGAAAAACGGTAATCCGGCTGCGGGATT
TTCTCCGTTGGTTCTTTTGCCAAAAACTTCCGCGCCGCTGGGAGTGAAAATGGACAGCGTACCGGTACTGACTTACGTCA
ACGACTTTGACGCGCGGATGCCACTGTTTTTCAAATGCACAGGGAATACCTGTCAGGTGGATGAAGAGCATAGCCGTAAA
GGCTGA

Upstream 100 bases:

>100_bases
ACGCAACAGGTGACACCCACCAATCCCCCTGTTTCTGTTTCAGCTAACCAATAACGTGATTAAGGAATGATCCATGTCTG
ATTTACTTTGCTCTGCCAAA

Downstream 100 bases:

>100_bases
CGCCCGGAGAGTCTTATGAGACGAATTTTTCTGCACCGTTCAAGCGTATTACTGACCTGCTGGGTAATAAGCCATCTTGC
TGTCGCTGGCGATATGAAAA

Product: periplasmic pilus chaperone family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKISSPLTVLPPVQRIDSM
MNGQVKVQGMPDINKLPADRESLFYFNVREIPPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKVTLTRNGQEF
TVNNPTPYYVIFSNASAEKNGNPAAGFSPLVLLPKTSAPLGVKMDSVPVLTYVNDFDARMPLFFKCTGNTCQVDEEHSRK
G

Sequences:

>Translated_241_residues
MGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKISSPLTVLPPVQRIDSM
MNGQVKVQGMPDINKLPADRESLFYFNVREIPPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKVTLTRNGQEF
TVNNPTPYYVIFSNASAEKNGNPAAGFSPLVLLPKTSAPLGVKMDSVPVLTYVNDFDARMPLFFKCTGNTCQVDEEHSRK
G
>Mature_240_residues
GATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKISSPLTVLPPVQRIDSMM
NGQVKVQGMPDINKLPADRESLFYFNVREIPPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKVTLTRNGQEFT
VNNPTPYYVIFSNASAEKNGNPAAGFSPLVLLPKTSAPLGVKMDSVPVLTYVNDFDARMPLFFKCTGNTCQVDEEHSRKG

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=241, Percent_Identity=90.0414937759336, Blast_Score=423, Evalue=1e-120,
Organism=Escherichia coli, GI1786936, Length=239, Percent_Identity=37.6569037656904, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI87082203, Length=240, Percent_Identity=37.0833333333333, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI1786333, Length=181, Percent_Identity=37.5690607734807, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787171, Length=222, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1789532, Length=182, Percent_Identity=33.5164835164835, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788428, Length=205, Percent_Identity=33.6585365853659, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790771, Length=164, Percent_Identity=34.1463414634146, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786743, Length=186, Percent_Identity=34.4086021505376, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081806, Length=174, Percent_Identity=31.0344827586207, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 26806; Mature: 26675

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEK
CCHHHHHHHHHHHCCCCEECCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHCCCC
GNKISSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESLFYFNVREIPPKSNKANT
CCCCCCCEEECCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCE
LQIALQTRIKLFWRPKALENVSMKNPWQYKVTLTRNGQEFTVNNPTPYYVIFSNASAEKN
EEEEEEEEEEEEECCHHHCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEEEECCCCCCC
GNPAAGFSPLVLLPKTSAPLGVKMDSVPVLTYVNDFDARMPLFFKCTGNTCQVDEEHSRK
CCCCCCCCCEEEEECCCCCCCEEECCCEEEEEECCCCCCCCEEEEECCCEEECCHHHCCC
G
C
>Mature Secondary Structure 
GATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEK
CHHHHHHHHHHHCCCCEECCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHCCCC
GNKISSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESLFYFNVREIPPKSNKANT
CCCCCCCEEECCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCE
LQIALQTRIKLFWRPKALENVSMKNPWQYKVTLTRNGQEFTVNNPTPYYVIFSNASAEKN
EEEEEEEEEEEEECCHHHCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEEEECCCCCCC
GNPAAGFSPLVLLPKTSAPLGVKMDSVPVLTYVNDFDARMPLFFKCTGNTCQVDEEHSRK
CCCCCCCCCEEEEECCCCCCCEEECCCEEEEEECCCCCCCCEEEEECCCEEECCHHHCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]