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The map label for this gene is yjcH

Identifier: 157157484

GI number: 157157484

Start: 4623982

End: 4624296

Strand: Reverse

Name: yjcH

Synonym: EcE24377A_4623

Alternate gene names: 157157484

Gene position: 4624296-4623982 (Counterclockwise)

Preceding gene: 157158352

Following gene: 157158113

Centisome position: 92.86

GC content: 49.21

Gene sequence:

>315_bases
ATGAATGGCACTATTTATCAGCGGATAGAAGACAATGCGCATTTCAGGGAGTTAGTCGAAAAACGGCAACGGTTTGCCAC
CATCCTGTCGATTATTATGCTGGCAGTTTATATCGGCTTTATTTTACTGATCGCCTTCGCGCCCGGCTGGCTGGGCACGC
CGCTGAATCCGAACACCAGCGTCACACGCGGTATTCCAATTGGTGTTGGAGTGATTGTGATCTCCTTTGTTCTCACCGGT
ATCTACATCTGGCGGGCGAACGGCGAATTCGACCGTCTTAATAATGAAGTCCTGCATGAGGTACAAGCATCATGA

Upstream 100 bases:

>100_bases
TATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCTCCCATAAGGGAGCGGGAATTAAAACAATCCCTACA
TTACCTCTGGAGAATCTGTG

Downstream 100 bases:

>100_bases
AAAGAGTTCTGACGGCGCTTGCCGCCACACTCCCTTTCGCAGCTAACGCCGCGGATGCTATTAGCGGGGCCGTAGAGCGC
CAGCCAACGAACTGGCAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTG
IYIWRANGEFDRLNNEVLHEVQAS

Sequences:

>Translated_104_residues
MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTG
IYIWRANGEFDRLNNEVLHEVQAS
>Mature_104_residues
MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTG
IYIWRANGEFDRLNNEVLHEVQAS

Specific function: Unknown

COG id: COG3162

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790504, Length=104, Percent_Identity=100, Blast_Score=210, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJCH_ECOLI (P0AF54)

Other databases:

- EMBL:   U00006
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   C65215
- RefSeq:   AP_004569.1
- RefSeq:   NP_418492.1
- ProteinModelPortal:   P0AF54
- STRING:   P0AF54
- EnsemblBacteria:   EBESCT00000001304
- EnsemblBacteria:   EBESCT00000001305
- EnsemblBacteria:   EBESCT00000017124
- GeneID:   948574
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW4029
- KEGG:   eco:b4068
- EchoBASE:   EB1887
- EcoGene:   EG11943
- eggNOG:   COG3162
- GeneTree:   EBGT00050000011406
- HOGENOM:   HBG698998
- OMA:   SITWGIP
- ProtClustDB:   CLSK880839
- BioCyc:   EcoCyc:YJCH-MONOMER
- Genevestigator:   P0AF54
- InterPro:   IPR007436

Pfam domain/function: PF04341 DUF485

EC number: NA

Molecular weight: Translated: 11672; Mature: 11672

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x22a71578)-; HASH(0x22bab224)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTS
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
VTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQAS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCH
>Mature Secondary Structure
MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTS
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
VTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQAS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503