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The map label for this gene is rfaQ [H]

Identifier: 157157104

GI number: 157157104

Start: 4123005

End: 4124027

Strand: Reverse

Name: rfaQ [H]

Synonym: EcE24377A_4133

Alternate gene names: 157157104

Gene position: 4124027-4123005 (Counterclockwise)

Preceding gene: 157158292

Following gene: 157157470

Centisome position: 82.82

GC content: 47.12

Gene sequence:

>1023_bases
ATGCGTTTTCATGGGGATATGTTATTAACTACTCCCGTCATTAGTTCGCTGAAAAAAAATTACCCTGACGCAAAAATCGA
TGTGCTGCTTTATCAGGACACCATCCCGATCCTGTCTGAAAATCCAGAGATTAACGCGCTCTACGGCATAAAAAATAAAA
AAGCAAAAGCCTCAGAAAAAATTGCCAACTTTTTTCATCTCATCAAGGTATTACGTGCCAATAAGTATGACCTTATCGTC
AATCTTACCGATCAATGGATGGTTGCTATACTGGTTCGCTTATTAAATGCTCGTGTGAAAATTTCCCAGGATTATCATCA
TCGGCAGTCTGCTTTTTGGCGTAAAAGTTTCACCCATTTGGTGCCGTTGCAGGGTGGAAATGTGGTGGAAAGTAACTTAT
CCGTGCTGACACCATTGGGACTTGATTCGTTGGTGAAGCAGACAACCATGAGTTACCCGCCTGCAAGCTGGAAACGTATG
CGTCGCGAACTTGATCACGCTGGTGTTGGACAAAATTATGTGGTTATCCAACCTACGGCGCGGCAAATCTTCAAATGCTG
GGACAACGCCAAGTTTTCCGCTGTGATTGATGCCTTACATGCTCGTGGTTATGAAGTCGTTCTGACGTCCGGCCCAGATA
AAGACGATCTGGCCTGCGTCAATGAAATTGCGCAGGGATGCCAGACGCCACCAGTAACGGCGCTGGCTGGAAAGGTGACC
TTCCCGGAACTTGGTGCGTTAATCGATCATGCGCAGCTGTTTATTGGCGTTGATTCCGCACCGGCGCATATTGCCGCTGC
AGTTAATACGCCGCTGATATCGCTGTTTGGCGCAACAGATCATATTTTCTGGCGTCCCTGGTCAAATAACATGATTCAAT
TCTGGGCGGGAGATTACCGGGAAATGCCAACGCGCGATCAGCGTGACCGAAATGAGATGTATCTTTCGGTTATTCCGGCG
GCAGATGTCATTGCTGCTGTCGATAAATTACTGCCCTCCTCCACGACAGGTACGTCGTTATGA

Upstream 100 bases:

>100_bases
TGGGGCGGTAGCGTGCTTTTTCTGCTTCACCTTAATCGGATAATCTCAACAAAAAGAGTTACTTGTGGATAAGCCATTTC
GAAGAATTTTGCTCATTAAG

Downstream 100 bases:

>100_bases
TCGTTGCTTTTTGTTTATATAAATATTTTCCCTTTGGCGGTTTGCAGCGCGATTTTATGCGTATTGCTCAGACAGTCGCC
GCCCGAGGTCATCATGTTCG

Product: lipopolysaccharide core biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAKASEKIANFFHLIKVLRANKYDLIV
NLTDQWMVAILVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGNVVESNLSVLTPLGLDSLVKQTTMSYPPASWKRM
RRELDHAGVGQNYVVIQPTARQIFKCWDNAKFSAVIDALHARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVT
FPELGALIDHAQLFIGVDSAPAHIAAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYREMPTRDQRDRNEMYLSVIPA
ADVIAAVDKLLPSSTTGTSL

Sequences:

>Translated_340_residues
MRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAKASEKIANFFHLIKVLRANKYDLIV
NLTDQWMVAILVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGNVVESNLSVLTPLGLDSLVKQTTMSYPPASWKRM
RRELDHAGVGQNYVVIQPTARQIFKCWDNAKFSAVIDALHARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVT
FPELGALIDHAQLFIGVDSAPAHIAAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYREMPTRDQRDRNEMYLSVIPA
ADVIAAVDKLLPSSTTGTSL
>Mature_340_residues
MRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAKASEKIANFFHLIKVLRANKYDLIV
NLTDQWMVAILVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGNVVESNLSVLTPLGLDSLVKQTTMSYPPASWKRM
RRELDHAGVGQNYVVIQPTARQIFKCWDNAKFSAVIDALHARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVT
FPELGALIDHAQLFIGVDSAPAHIAAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYREMPTRDQRDRNEMYLSVIPA
ADVIAAVDKLLPSSTTGTSL

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=333, Percent_Identity=73.2732732732733, Blast_Score=519, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 37935; Mature: 37935

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAKASEK
CCCCCCEEEHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHH
IANFFHLIKVLRANKYDLIVNLTDQWMVAILVRLLNARVKISQDYHHRQSAFWRKSFTHL
HHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHCCEE
VPLQGGNVVESNLSVLTPLGLDSLVKQTTMSYPPASWKRMRRELDHAGVGQNYVVIQPTA
EECCCCCEEECCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEECCCH
RQIFKCWDNAKFSAVIDALHARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVT
HHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCC
FPELGALIDHAQLFIGVDSAPAHIAAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYR
CHHHHHHHHHCEEEEECCCCCCCEEEHHCCCHHEEECCCCCEEEECCCCCEEEEECCCCC
EMPTRDQRDRNEMYLSVIPAADVIAAVDKLLPSSTTGTSL
CCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAKASEK
CCCCCCEEEHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHH
IANFFHLIKVLRANKYDLIVNLTDQWMVAILVRLLNARVKISQDYHHRQSAFWRKSFTHL
HHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHCCEE
VPLQGGNVVESNLSVLTPLGLDSLVKQTTMSYPPASWKRMRRELDHAGVGQNYVVIQPTA
EECCCCCEEECCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEECCCH
RQIFKCWDNAKFSAVIDALHARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVT
HHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCC
FPELGALIDHAQLFIGVDSAPAHIAAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYR
CHHHHHHHHHCEEEEECCCCCCCEEEHHCCCHHEEECCCCCEEEECCCCCEEEEECCCCC
EMPTRDQRDRNEMYLSVIPAADVIAAVDKLLPSSTTGTSL
CCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA