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The map label for this gene is cse1 [H]

Identifier: 157156933

GI number: 157156933

Start: 3061527

End: 3063089

Strand: Reverse

Name: cse1 [H]

Synonym: EcE24377A_3062

Alternate gene names: 157156933

Gene position: 3063089-3061527 (Counterclockwise)

Preceding gene: 157158852

Following gene: 157154905

Centisome position: 61.51

GC content: 50.74

Gene sequence:

>1563_bases
ATGAACTCGTTTTCACTTCTGACAACCCCGTGGTTGCCTGTTCGTTTTAAAGACGGAACGACAGGCAAGCTGGCACCAGT
CGATCTGGCTGATGAAAATGTTGTCGATATCGCTGCGCCGCGGGCAGATCTCCAGGGTGCGGCCTGGCAGTTTTTGCTGG
GGCTACTACAAACCAGCTTCGCGCCCAAAAATCACGGTCGTTGGGATGATATCTGGGAAGACGGACTGGAGGCTGAAAAG
CTACGGGAAGCATTGCTGTCCTTAGAACACGCTTTCCAGTTTGGGGCAGATTCCCCTTCATTTATGCAGGATTTCGAGGC
GCTCAAGGGAGATAAAGTTCAGGTCGCTTCGCTACTGCCTGAGATTCCCGGCGCTCAAACAACGAAGTTTAATAAAGACC
ACTTTATTAAGCGTGGCGTGACTGAACACGTATGCCCTCATTGTTCCGCGTTAGCTCTGTTCTCCCTACAGTTAAATGCG
CCATCAGGCGGCAAAGGCTATCGCACCGGTTTGCGCGGCGGTGGGCCGATGACCACTCTGATTGAATTACAGGAATATCA
AGGCAATCAACAAACGCCCTTGTGGCGCAAACTGTGGCCCAATGTGATGCCGCAGGATGAAGCCGACTTACCGCTACCCA
AAAAATTTGACGATCTGGTTTTCCCCTGGCTTGGCCCGACGCGAACCAGCGAACTGGCCGGTGCGGTGGTAACCCATGAT
CAGGTCAATAAACTCCAGGCTTACTGGGGAATGCCGCGCCGTATTCGTATTGATTTTAATACCACGACAGTCGGCAACTG
CGATATTTGCGGTGAACAGAGCGACGCGCTCCTGAGCCTGATGACGACCAAAAATTACGGTGCGAATTATGCCATGTGGC
AGCATCCCTTAACGCCTTACCGTATACCACTTAAAGAGGGTGGCGAGTTTTACTCGGTCAAACCACAACCGGGCGGTTTA
ATCTGGCGCGACTGGTTAGGCCTTATCGAAACGGGTAAATCAGAAAACAATACGGAACTTCCCGCGCTGGTGGTGAAACT
CTTTAATGCCAGCAGTCTGAAACAGGCAAAAGTAGGCCTGTGGGGATTTGGCTATGATTTCGACAACATGAAAGCGCGCT
GTTGGTACGAACACCATTTCCCGCTGCTGCTCAAGAAAAAAGAAGGCCAGATACCGAAACTGCGTCTGGCTGCGCAAACG
GCTTCACGGATTCTAAGTCTGTTACGAAGTGCATTGAAAGAAGCGTGGTTCTCCGATCCAAAAGGTGCACGGGGTGATTT
CAGTTTTGTGGATATCGACTTCTGGAACAAAACTCAGCATCGCTTCCTGAGGTTAGTGCGCCAAATTGAAGAAGGTCAGG
ATGCGGACGAATTACTCGGCAAATGGCAAAAGGAAATTTGGTTATTCGCGCGTCAGGATTTTGACGAGCGTGTATTCACC
AATCCATATGAGCCTGTTGATTTGAAACGCGTTATGACCGCGCGCAAGAAATATTTCACAACATCGGCGGAGAAGCAAAG
TGCTAAAGCCGCCAGGGAGAAAAAGCAGGAGGCTGCTGAATGA

Upstream 100 bases:

>100_bases
TGAGATGTCTGCGACAGGACTCTCTGAATAGTTGATACACCGAAAAGGATGGAAAGATGGACAACCGACCTGGGATGGTC
TTTTTTACGAGAGGATGCGT

Downstream 100 bases:

>100_bases
GTATTGTAAAAGAGGAGCACAAAGCCACGCTGCGCAAATGGCACGAGGAATTGCAGGAGAAACGTGGCGAACGTGCCAGT
CTGCGGCGTAGTACGACGGT

Product: CRISPR-associated Cse1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWEDGLEAEK
LREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNA
PSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHD
QVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGL
IWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQT
ASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFT
NPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE

Sequences:

>Translated_520_residues
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWEDGLEAEK
LREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNA
PSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHD
QVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGL
IWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQT
ASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFT
NPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>Mature_520_residues
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWEDGLEAEK
LREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNA
PSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHD
QVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGL
IWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQT
ASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFT
NPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789118, Length=516, Percent_Identity=19.9612403100775, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013381 [H]

Pfam domain/function: PF09481 CRISPR_Cse1 [H]

EC number: NA

Molecular weight: Translated: 58936; Mature: 58936

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSF
CCCCCEEECCCEEEEECCCCCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
APKNHGRWDDIWEDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLP
CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHCC
EIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTL
CCCCCCCCCCCHHHHHHCCCHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHE
IELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHD
EEEHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHH
QVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPY
HHHHHHHHHCCCEEEEEEECCEECCCCCCCCCCCHHHEEEEECCCCCCCCEEECCCCCCE
RIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGL
EEECCCCCCEEEECCCCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHCCE
WGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDP
EEECCCCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFT
CCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHC
NPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSF
CCCCCEEECCCEEEEECCCCCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
APKNHGRWDDIWEDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLP
CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHCC
EIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTL
CCCCCCCCCCCHHHHHHCCCHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHE
IELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHD
EEEHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHH
QVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPY
HHHHHHHHHCCCEEEEEEECCEECCCCCCCCCCCHHHEEEEECCCCCCCCEEECCCCCCE
RIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGL
EEECCCCCCEEEECCCCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHCCE
WGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDP
EEECCCCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFT
CCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHC
NPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]