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The map label for this gene is ycjD [H]

Identifier: 157156848

GI number: 157156848

Start: 1483134

End: 1483484

Strand: Reverse

Name: ycjD [H]

Synonym: EcE24377A_1496

Alternate gene names: 157156848

Gene position: 1483484-1483134 (Counterclockwise)

Preceding gene: 157156325

Following gene: 157155907

Centisome position: 29.79

GC content: 51.28

Gene sequence:

>351_bases
ATGGATAAAATAAAATCAAATGCGCGTGATTTAAGACGCAATCTCACTTTGCAGGAACGAAAGCTCTGGCGATATCTTCG
CAGCCGACGTTTTGGTGATTTCAAATTTCGCCGTCAACATCCGGTGGGGAGCTACATTCTCGATTTTGCTTGCTGCTCGG
CGCGCGTAGTCGTTGAGCTGGATGGTGGGCAGCATGATTTGGCAGTTGCCTATGATACCAGGCGCACTAGCTGGCTTGAG
TCGCAGAGCTGGACCGTGCTGCGTTTCTGGCATAACGAGATTGATTGTAATGAGGAGGCGGTGCTGGAGATTATTCTGCA
GGAACTGAACCGCCGGTCACCCTCACCCTGA

Upstream 100 bases:

>100_bases
ACAGCGGATGCGTGGCGTAAAGATCGCTAATTTTCTGAATCCTCCTTCCAGATTATCCACCTCATTCTGACAAGAGATTA
AATCTTGTCAGAATGAGGTG

Downstream 100 bases:

>100_bases
AAGGGCGAGGGGGCCGACCGAGCCGAATAGCTGTTGTGGTGAAAACATGGAGACAGTGCTGGAGAATATTCGGCAAGGTC
TGAACCATCCCAGCCATCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWLE
SQSWTVLRFWHNEIDCNEEAVLEIILQELNRRSPSP

Sequences:

>Translated_116_residues
MDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWLE
SQSWTVLRFWHNEIDCNEEAVLEIILQELNRRSPSP
>Mature_116_residues
MDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWLE
SQSWTVLRFWHNEIDCNEEAVLEIILQELNRRSPSP

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=116, Percent_Identity=93.9655172413793, Blast_Score=226, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 13882; Mature: 13882

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVEL
CCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEE
DGGQHDLAVAYDTRRTSWLESQSWTVLRFWHNEIDCNEEAVLEIILQELNRRSPSP
CCCCCEEEEEECCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVEL
CCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEE
DGGQHDLAVAYDTRRTSWLESQSWTVLRFWHNEIDCNEEAVLEIILQELNRRSPSP
CCCCCEEEEEECCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]