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The map label for this gene is ydiU

Identifier: 157156707

GI number: 157156707

Start: 1915629

End: 1917065

Strand: Reverse

Name: ydiU

Synonym: EcE24377A_1924

Alternate gene names: 157156707

Gene position: 1917065-1915629 (Counterclockwise)

Preceding gene: 157154728

Following gene: 157157496

Centisome position: 38.5

GC content: 52.33

Gene sequence:

>1437_bases
ATGACCCTGTCTTTTATTACCCGCTGGCGCGATGAATTGCCAGCAACCTATACAGCACTTTCCCCTACGCCTTTAAATAA
TGCCCGGCTGATTTGGCATAATACCGAACTCGCTAACACGCTGAGTATTCCATCGTCGCTGTTTAAAAATGGCGCAGGTG
TCTGGGGCGGCGAAACCCTACTGCCTGGTATGTCACCACTGGCGCAGGTTTACAGTGGTCATCAGTTCGGCGTCTGGGCG
GGCCAACTGGGTGATGGGCGCGGTATTTTACTCGGCGAACAACTGCTTGCTGATGGCACTACAATGGACTGGCATCTGAA
AGGTGCTGGCCTGACGCCTTATTCGCGAATGGGTGATGGACGGGCGGTTTTACGTTCGACGATACGAGAAAGTCTCGCCA
GTGAGGCGATGCATTATCTGGGCATTCCGACGACCCGCGCGTTAAGTATCGTCACCAGCGATTCGCCAGTGTATCGGGAA
ACGGTGGAGCCAGGCGCGATGCTGATGCGTGTGGCACCAAGTCATCTGCGCTTTGGTCATTTCGAACATTTTTACTATCG
CCGCGAGCCGGAAAAGGTTCGTCAGTTAGCTGACTTTGCCATTCGTCATTACTGGTCATATCTTGAAGATGATGAGGACA
AATACCGCCTCTGGTTTAGCGATGTTGTCGCACGTACCGCATCGTTAATTGCCCAATGGCAGACGGTCGGCTTTGCTCAT
GGGGTGATGAATACCGATAACATGTCGCTGCTGGGGCTGACGCTTGATTACGGGCCGTTTGGTTTTCTGGATGATTACGA
ACCCGGTTTTATTTGTAATCACTCGGATCATCAAGGGCGTTATAGCTTTGATAATCAACCTGCTGTCGCGTTGTGGAATT
TACATCGTCTGGCGCAGACATTGTCACCATTTGTTGCCGTAGATGCCCTGAATGAGGCCCTGGACAGCTATCAGCAGGTT
TTGTTGACGCATTATGGACAACGGATGCGGCAGAAACTGGGCTTCATGACGGAGCAAAAAGAGGATAACGCGCTACTGAA
TGAATTATTCAGTCTGATGGCGCGAGAGCGCAGCGATTATACCCGCACATTCCGCATGCTGAGTCTGACCGAGCAGCACA
GCGCGGCGTCACCGCTACGTGATGAGTTTATTGATCGTGCGGCATTTGATGACTGGTTTGCCCGTTATCGGGGGCGTTTG
CAACAAGACGAGGTTAGCGATAGTGAGCGTCAGCAGCTGATGCAAAGCGTTAACCCAGCTCTGGTGTTGCGCAACTGGTT
GGCGCAACGGGCGATTGAAGCGGCAGAAAAGGGTGATATGACGGAATTGCACCGCCTGCATGAGGCGTTGCGAAATCCTT
TCAGCGACAGAGATGATGACTATGTCAGTCGTCCACCTGACTGGGGTAAACGGCTGGAAGTCAGCTGCTCGAGTTAA

Upstream 100 bases:

>100_bases
TTCCTATAAATCAGATAACGACGTTGGTTCAGCGATAACCCTCCTGTTTGCTGGTGTTTAAGACGAGAGTAACCGTCTAC
ACTATTAAACAGGAGGAGCT

Downstream 100 bases:

>100_bases
AGGCTACTTGGTCAACAGCAGCTTGCCAGCCTGAGTTTTACGGAGCAGATATTCTTGCCCGTCATGATCGATAATCAGTT
TGCCATCCGGACCTAACAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MTLSFITRWRDELPATYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGETLLPGMSPLAQVYSGHQFGVWA
GQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
TVEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRHYWSYLEDDEDKYRLWFSDVVARTASLIAQWQTVGFAH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLHRLAQTLSPFVAVDALNEALDSYQQV
LLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRGRL
QQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS

Sequences:

>Translated_478_residues
MTLSFITRWRDELPATYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGETLLPGMSPLAQVYSGHQFGVWA
GQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
TVEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRHYWSYLEDDEDKYRLWFSDVVARTASLIAQWQTVGFAH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLHRLAQTLSPFVAVDALNEALDSYQQV
LLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRGRL
QQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS
>Mature_477_residues
TLSFITRWRDELPATYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGETLLPGMSPLAQVYSGHQFGVWAG
QLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRET
VEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRHYWSYLEDDEDKYRLWFSDVVARTASLIAQWQTVGFAHG
VMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLHRLAQTLSPFVAVDALNEALDSYQQVL
LTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRGRLQ
QDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=384, Percent_Identity=42.96875, Blast_Score=293, Evalue=2e-79,
Organism=Escherichia coli, GI1787999, Length=478, Percent_Identity=98.1171548117155, Blast_Score=971, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6325034, Length=344, Percent_Identity=36.9186046511628, Blast_Score=219, Evalue=9e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDIU_ECO24 (A7ZMH3)

Other databases:

- EMBL:   CP000800
- RefSeq:   YP_001463002.1
- STRING:   A7ZMH3
- EnsemblBacteria:   EBESCT00000023205
- GeneID:   5586545
- GenomeReviews:   CP000800_GR
- KEGG:   ecw:EcE24377A_1924
- NMPDR:   fig|331111.3.peg.4348
- eggNOG:   COG0397
- GeneTree:   EBGT00050000010410
- HOGENOM:   HBG683993
- OMA:   THIRFGH
- ProtClustDB:   PRK00029
- BioCyc:   ECOL331111:ECE24377A_1924-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 54499; Mature: 54368

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSFITRWRDELPATYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGETL
CCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCHHHHHHHCCHHHHHCCCCCCCCCCC
LPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDG
CCCCHHHHHHHCCCCCCEEECCCCCCCEEEECHHHHHCCCCEEEEECCCCCCCHHHCCCH
RAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETVEPGAMLMRVAPSHLRFGH
HHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHCCCHHHHHHHCHHHHCCCC
FEHFYYRREPEKVRQLADFAIRHYWSYLEDDEDKYRLWFSDVVARTASLIAQWQTVGFAH
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLHRLAQT
CCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
LSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
TRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCHH
LVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure 
TLSFITRWRDELPATYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGETL
CHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCHHHHHHHCCHHHHHCCCCCCCCCCC
LPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDG
CCCCHHHHHHHCCCCCCEEECCCCCCCEEEECHHHHHCCCCEEEEECCCCCCCHHHCCCH
RAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETVEPGAMLMRVAPSHLRFGH
HHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHCCCHHHHHHHCHHHHCCCC
FEHFYYRREPEKVRQLADFAIRHYWSYLEDDEDKYRLWFSDVVARTASLIAQWQTVGFAH
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLHRLAQT
CCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
LSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
TRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCHH
LVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA