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The map label for this gene is ydfE [H]

Identifier: 157156645

GI number: 157156645

Start: 1264375

End: 1265907

Strand: Reverse

Name: ydfE [H]

Synonym: EcE24377A_1251

Alternate gene names: 157156645

Gene position: 1265907-1264375 (Counterclockwise)

Preceding gene: 157154926

Following gene: 157158330

Centisome position: 25.42

GC content: 49.12

Gene sequence:

>1533_bases
ATGAGTAAAGTCTTTATTTGCGCCGCCATTCCGGACGAACAGGCAATAAAGGAAGAAGGTGCAGTCGCTGTAGCCACTGC
CATTGAAGCTGGTGATGAACGTCGCGCCCGCGCAAAATTTCACTGGCAATTCCTGGAACATTATCCGGCTGCTCAGGACT
GCGCTTATAAATTTCTTGTTTGCGAGGATAAACCCGGTATACCCCGCCCTGCCCTCGATTCCTGGGATGCTGAATATATG
CAGGAAAACCGCTGGGATGAGGAGTCTGCTTCCTTTGTACCGGTTGAGACTGAATCAGATCCGATGAACGTCACTTTTGA
CAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAATATCACCGTTGATATGGTGATTA
GCGCGCAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTT
AACGCCATGTATCCGGAGCTTAAGCTGCATACCATCGGGTGGGTTAAGCATAAATGTAAGCCTGGTGCCAAATGGCCCGA
AATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATACACGTCTGTTGTTG
ATCTCGCCCGCGCCAGAGCCAATCAACAGAACACTGAAAATTCAACAGGAAAAATCAACCCGGCCATTGCTGCCACTCAT
CGCGAATACAAGCAGACATGGAAAACACTGGATGATGAACTGGCCTACGCTCTGTGGCCTGGTGACATTGATGCCGGAAA
CATTGACGGCAGCATCCATCGCTGGGCAAAAAATGAAGTTATCAACAACGACCGCGAAGACTGGAAGCGTATCTCGGCAT
CAATGCGCAAACAGCCTGATGCCCTTCGCTACGACCGCCAGACTATTTTTGGCCTTGTCCGTGAGCGTCCGATCGACATT
CACAAAGACCCTGTGGCACTGAACAAATACATTACTGAATACCTGACTACAAAGGGCGTGTTTGAAGATGAAGGAACAAA
TCAGATCGCAACTGATACTCTCTCGTCGCCAGTACCAGAAACTGATGCAGTGGAAACGGCAATTCCGGACAACGAAAAAA
CCGAATGCAAAGTGGAAGTCGAACCATCTGTAGAGCGTGAGGGGCCGTTCTACTTCCTCTTCACCGACAAGGATGGCGAA
AAATACGGTCGCGCAAACAAACTTTCTGGTCTGGATAAGGCACTGGCTGCCGGGGCTACTGAAATCACGAAAGAAGAATA
TTTCGTCCGCAAAAACGGTACATACTCAGGTTCACAACAAAATACTGGTGCATCTGACACGACCGCACAACCAGGGCCGG
TAAAAGTTACCGCTGACGAAGTAAACAACATTATGCAGGCAGCCAATATCAGCCAGCCTGACGCCGATGAACTGCTTGCA
GTATCACGTGGTGAATTTGTTGCAGGGATTAGCGATCCGAATGATCCGAAATGGGTGAAGGGGATTGAAACCCGCGATTC
TGTGAACCAGTAG

Upstream 100 bases:

>100_bases
TCTTTAAAACAGTTCCGTAATAAACATCCGATTTCATTCTTATATGCCAGCAATGGCAGGGATTTGTTCATCCTTAAATC
TGTAATGAGGTTAAAACAAA

Downstream 100 bases:

>100_bases
CGCAACAGGAACCGGAAAAGATCTGCACCGCCTGCGGTCAGAGCGATGGCGGCAACTGCCCTGATTGTGGCGCGGTGATG
GGCGACGCAACATACCAGGA

Product: exonuclease family protein

Products: NA

Alternate protein names: ORF6 [H]

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLVCEDKPGIPRPALDSWDAEYM
QENRWDEESASFVPVETESDPMNVTFDKLAPEVQNAVMVKFDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEV
NAMYPELKLHTIGWVKHKCKPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQNTENSTGKINPAIAATH
REYKQTWKTLDDELAYALWPGDIDAGNIDGSIHRWAKNEVINNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDI
HKDPVALNKYITEYLTTKGVFEDEGTNQIATDTLSSPVPETDAVETAIPDNEKTECKVEVEPSVEREGPFYFLFTDKDGE
KYGRANKLSGLDKALAAGATEITKEEYFVRKNGTYSGSQQNTGASDTTAQPGPVKVTADEVNNIMQAANISQPDADELLA
VSRGEFVAGISDPNDPKWVKGIETRDSVNQ

Sequences:

>Translated_510_residues
MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLVCEDKPGIPRPALDSWDAEYM
QENRWDEESASFVPVETESDPMNVTFDKLAPEVQNAVMVKFDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEV
NAMYPELKLHTIGWVKHKCKPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQNTENSTGKINPAIAATH
REYKQTWKTLDDELAYALWPGDIDAGNIDGSIHRWAKNEVINNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDI
HKDPVALNKYITEYLTTKGVFEDEGTNQIATDTLSSPVPETDAVETAIPDNEKTECKVEVEPSVEREGPFYFLFTDKDGE
KYGRANKLSGLDKALAAGATEITKEEYFVRKNGTYSGSQQNTGASDTTAQPGPVKVTADEVNNIMQAANISQPDADELLA
VSRGEFVAGISDPNDPKWVKGIETRDSVNQ
>Mature_509_residues
SKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLVCEDKPGIPRPALDSWDAEYMQ
ENRWDEESASFVPVETESDPMNVTFDKLAPEVQNAVMVKFDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEVN
AMYPELKLHTIGWVKHKCKPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQNTENSTGKINPAIAATHR
EYKQTWKTLDDELAYALWPGDIDAGNIDGSIHRWAKNEVINNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDIH
KDPVALNKYITEYLTTKGVFEDEGTNQIATDTLSSPVPETDAVETAIPDNEKTECKVEVEPSVEREGPFYFLFTDKDGEK
YGRANKLSGLDKALAAGATEITKEEYFVRKNGTYSGSQQNTGASDTTAQPGPVKVTADEVNNIMQAANISQPDADELLAV
SRGEFVAGISDPNDPKWVKGIETRDSVNQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787612, Length=255, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57291; Mature: 57160

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLV
CCCEEEEEECCCHHHHHHCCCEEEEEEHHCCCHHHHHHHHHHHHHHHCCCHHHCEEEEEE
CEDKPGIPRPALDSWDAEYMQENRWDEESASFVPVETESDPMNVTFDKLAPEVQNAVMVK
ECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCEEHHHHCHHHCCEEEEE
FDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEVNAMYPELKLHTIGWVKHKCK
EECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHCCC
PGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQNTENSTGKINPAIAATH
CCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
REYKQTWKTLDDELAYALWPGDIDAGNIDGSIHRWAKNEVINNDREDWKRISASMRKQPD
HHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCH
ALRYDRQTIFGLVRERPIDIHKDPVALNKYITEYLTTKGVFEDEGTNQIATDTLSSPVPE
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCC
TDAVETAIPDNEKTECKVEVEPSVEREGPFYFLFTDKDGEKYGRANKLSGLDKALAAGAT
CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHCCCHHHHHHHHHHHCCCH
EITKEEYFVRKNGTYSGSQQNTGASDTTAQPGPVKVTADEVNNIMQAANISQPDADELLA
HHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCHHHHHE
VSRGEFVAGISDPNDPKWVKGIETRDSVNQ
ECCCCEEEECCCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
SKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLV
CCEEEEEECCCHHHHHHCCCEEEEEEHHCCCHHHHHHHHHHHHHHHCCCHHHCEEEEEE
CEDKPGIPRPALDSWDAEYMQENRWDEESASFVPVETESDPMNVTFDKLAPEVQNAVMVK
ECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCEEHHHHCHHHCCEEEEE
FDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEVNAMYPELKLHTIGWVKHKCK
EECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHCCC
PGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQNTENSTGKINPAIAATH
CCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
REYKQTWKTLDDELAYALWPGDIDAGNIDGSIHRWAKNEVINNDREDWKRISASMRKQPD
HHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCH
ALRYDRQTIFGLVRERPIDIHKDPVALNKYITEYLTTKGVFEDEGTNQIATDTLSSPVPE
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCC
TDAVETAIPDNEKTECKVEVEPSVEREGPFYFLFTDKDGEKYGRANKLSGLDKALAAGAT
CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHCCCHHHHHHHHHHHCCCH
EITKEEYFVRKNGTYSGSQQNTGASDTTAQPGPVKVTADEVNNIMQAANISQPDADELLA
HHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCHHHHHE
VSRGEFVAGISDPNDPKWVKGIETRDSVNQ
ECCCCEEEECCCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2477663; 9097039; 9278503 [H]