Click here to switch to the map view.

The map label for this gene is ybjS [H]

Identifier: 157155941

GI number: 157155941

Start: 955130

End: 956179

Strand: Reverse

Name: ybjS [H]

Synonym: EcE24377A_0940

Alternate gene names: 157155941

Gene position: 956179-955130 (Counterclockwise)

Preceding gene: 157156770

Following gene: 157157231

Centisome position: 19.2

GC content: 53.9

Gene sequence:

>1050_bases
ATGCGCACGTTATTTTCTCAACAACAGTGGATTGATATGAAGGTACTGGTTACCGGCGCCACCAGCGGCTTAGGTCGAAA
CGCGGTAGAGTTTTTATGCCAGAAAGGCATCAGCGTGCGAGCGACCGGTCGCAACGAGGCAATGGGCAAATTGCTGGAAA
AAATGGGCGCAGAGTTTGTTCCGGCGGATCTGACCGAGCTGGTTTCATCACAAGCTAAAGTGATGCTCGCGGGCATTGAT
ACGCTGTGGCACTGCTCCAGCTTTACCTCACCCTGGGGGACACAACAGGCTTTCGATCTGGCTAACGTTCGCGCCACTCG
CCGCCTGGGTGAATGGGCTGTCGCCTGGGGTGTGCGTAACTTTATTCATATCTCTTCCCCCTCCCTGTACTTCGATTATC
ACCACCATCGCGATATTAAAGAAGATTTTCGCCCTCACCGCTTCGCCAACGAGTTTGCCCGCAGCAAAGCAGCCAGCGAA
GAAGTGATCAATATGCTTTCGCAGGCGAATCCACAAACGCGCTTTACTATTCTGCGCCCACAAAGTCTGTTCGGACCGCA
CGATAAAGTCTTTATTCCCCGTCTGGCGCATATGATGCACCACTACGGCAGTATTCTGTTACCGCATGGCGGCAGTGCGC
TGGTCGATATGACCTACTATGAAAATGCCGTGCACGCAATGTGGCTGGCAAGCCAGGAAGCCTGCGATAAGCTACCTTCC
GGGCGTGTGTACAACATCACCAACGGCGAGCATCGCACACTGCGCAGCATCGTGCAGAAGCTGATCGACGAGTTGAATAT
TGACTGTCGTATTCGTTCCGTCCCCTACCCGATGCTGGATATGATCGCCCGCAGCATGGAGCGTTTAGGCCGCAAGTCAG
CAAAAGAGCCGCCGCTGACCCACTACGGCGTCTCCAAGTTGAATTTTGACTTTACGCTGGATATTACGCGTGCGCAGGAA
GAGTTAGGTTATCAGCCGGTCATCACCCTGGATGAAGGTATCGAGAAAACTGCCGCCTGGCTACGCGACCACGGAAAACT
GCCGCGCTAA

Upstream 100 bases:

>100_bases
AACAAATCGCCAGACTGGCAGAACAAAGCACAGATTAATCGACAAAACCTGCGTTATTCTTTCATGTTTCCCATTGCATC
ATGGGGGAAATCACGGAAGA

Downstream 100 bases:

>100_bases
TCCTGCCCGTATTTCTCCAGCAATGCTTCGGCAATCGCCTGAGTTTCTGCATCCGCTTCGCCGTTATATAACGTCGGGCG
GAAATGCATCTGGAATGCCA

Product: NAD-dependent epimerase/dehydratase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MRTLFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGID
TLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASE
EVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQE
ELGYQPVITLDEGIEKTAAWLRDHGKLPR

Sequences:

>Translated_349_residues
MRTLFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGID
TLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASE
EVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQE
ELGYQPVITLDEGIEKTAAWLRDHGKLPR
>Mature_349_residues
MRTLFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGID
TLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASE
EVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQE
ELGYQPVITLDEGIEKTAAWLRDHGKLPR

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=338, Percent_Identity=23.9644970414201, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI8393516, Length=338, Percent_Identity=23.9644970414201, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI239745448, Length=332, Percent_Identity=24.3975903614458, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI310132178, Length=332, Percent_Identity=24.3975903614458, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI310113012, Length=332, Percent_Identity=24.3975903614458, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI87081792, Length=337, Percent_Identity=100, Blast_Score=707, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17570557, Length=233, Percent_Identity=27.4678111587983, Blast_Score=75, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6321437, Length=294, Percent_Identity=25.5102040816327, Blast_Score=84, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 39621; Mature: 39621

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFV
CCCCCCCHHCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCC
PADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRN
CHHHHHHHHHHHEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRP
EEEECCCCEEEECHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
QSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
HHHCCCCCCHHHHHHHHHHHHHCCEEEECCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCC
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLT
CCEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC
HYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR
CCCHHHCCCEEEEEEEHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRTLFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFV
CCCCCCCHHCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCC
PADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRN
CHHHHHHHHHHHEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRP
EEEECCCCEEEECHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
QSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
HHHCCCCCCHHHHHHHHHHHHHCCEEEECCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCC
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLT
CCEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC
HYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR
CCCHHHCCCEEEEEEEHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]