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The map label for this gene is yihL [H]

Identifier: 157163344

GI number: 157163344

Start: 4090586

End: 4091296

Strand: Direct

Name: yihL [H]

Synonym: EcHS_A4099

Alternate gene names: 157163344

Gene position: 4090586-4091296 (Clockwise)

Preceding gene: 157163343

Following gene: 157163345

Centisome position: 88.09

GC content: 48.8

Gene sequence:

>711_bases
ATGACGGGAAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTAAAAGATGGCATCACTACGCCGGG
TGGAAAACTCCCTTCAGAAAGAGAGCTGGGAGAGCTGCTGGGCATTAAACGTATGACGCTGCGCCAGGCGTTGCTGAACC
TCGAGGCAGAATCCAAAATCTTCCGTAAGGATCGTAAAGGGTGGTTCGTGACTCAGCCGCGATTTAATTACAGCCCGGAG
CTGTCGGCGAGCTTTCAGCGGGCCGCAATTGAGCAAGGGCGGGAACCTTCCTGGGGGTTTACCGAGAAAAGCCGTACCAG
CGATATTCCCGAGACGCTCGCGCCACTGATTGCAGTGACGCCATCAACTGAACTCTATCGCATCACCGGCTGGGGGGCGT
TGGAAGGACATAAAGTTTTCTATCACGAAACATATATTAATCCTGAAGTTGCTCCGGGTTTTATTGAACAACTTGAAAAC
CACTCATTTTCTGCAGTCTGGGAAAAGTGCTACCAAAAAGAGACGGTAGTAAAAAAATTGATTTTCAAACCCGTCAGAAT
GCCGGGCGATATCAGCAAGTATCTTGGCGGTTCTGCGGGTATGCCAGCGATCTTAATTGAAAAGCATCGCGCCGACCAGC
AAGGCAATATTGTCCAGATAGATATTGAATATTGGCGATTTGAGGCCGTAGACCTCATCATTAATCTGTAG

Upstream 100 bases:

>100_bases
CTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCCTCATCTGGTT
TAAACCAAAAGGATTAAACA

Downstream 100 bases:

>100_bases
GTGTTTTATGGTGACAATAAATAACGCAAGAAAGATTCTACAACGTGTCGATACTCTTCCTCTTTATTTACATGCCTATG
CCTTTCATTTAAATATGCGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTGNQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQALLNLEAESKIFRKDRKGWFVTQPRFNYSPE
LSASFQRAAIEQGREPSWGFTEKSRTSDIPETLAPLIAVTPSTELYRITGWGALEGHKVFYHETYINPEVAPGFIEQLEN
HSFSAVWEKCYQKETVVKKLIFKPVRMPGDISKYLGGSAGMPAILIEKHRADQQGNIVQIDIEYWRFEAVDLIINL

Sequences:

>Translated_236_residues
MTGNQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQALLNLEAESKIFRKDRKGWFVTQPRFNYSPE
LSASFQRAAIEQGREPSWGFTEKSRTSDIPETLAPLIAVTPSTELYRITGWGALEGHKVFYHETYINPEVAPGFIEQLEN
HSFSAVWEKCYQKETVVKKLIFKPVRMPGDISKYLGGSAGMPAILIEKHRADQQGNIVQIDIEYWRFEAVDLIINL
>Mature_235_residues
TGNQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQALLNLEAESKIFRKDRKGWFVTQPRFNYSPEL
SASFQRAAIEQGREPSWGFTEKSRTSDIPETLAPLIAVTPSTELYRITGWGALEGHKVFYHETYINPEVAPGFIEQLENH
SFSAVWEKCYQKETVVKKLIFKPVRMPGDISKYLGGSAGMPAILIEKHRADQQGNIVQIDIEYWRFEAVDLIINL

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=236, Percent_Identity=98.728813559322, Blast_Score=481, Evalue=1e-137,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26870; Mature: 26739

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGNQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQALLNLEAESKI
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
FRKDRKGWFVTQPRFNYSPELSASFQRAAIEQGREPSWGFTEKSRTSDIPETLAPLIAVT
HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHEEEC
PSTELYRITGWGALEGHKVFYHETYINPEVAPGFIEQLENHSFSAVWEKCYQKETVVKKL
CCCCEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IFKPVRMPGDISKYLGGSAGMPAILIEKHRADQQGNIVQIDIEYWRFEAVDLIINL
HHHCCCCCCHHHHHCCCCCCCCCEEEEHHCCCCCCCEEEEEHHHHHHEEHHHEECC
>Mature Secondary Structure 
TGNQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQALLNLEAESKI
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
FRKDRKGWFVTQPRFNYSPELSASFQRAAIEQGREPSWGFTEKSRTSDIPETLAPLIAVT
HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHEEEC
PSTELYRITGWGALEGHKVFYHETYINPEVAPGFIEQLENHSFSAVWEKCYQKETVVKKL
CCCCEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IFKPVRMPGDISKYLGGSAGMPAILIEKHRADQQGNIVQIDIEYWRFEAVDLIINL
HHHCCCCCCHHHHHCCCCCCCCCEEEEHHCCCCCCCEEEEEHHHHHHEEHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]